Difference between revisions of "YxiE"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxxF]]'', ''[[bglH]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxxF]]'', ''[[bglH]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39250 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39250 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yxiE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxiE_context.gif]]

Revision as of 11:39, 14 May 2013

  • Description: unknown

Gene name yxiE
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yxiE
Metabolic function and regulation of this protein in SubtiPathways:
Sugar catabolism
MW, pI 15 kDa, 6.335
Gene length, protein length 444 bp, 148 aa
Immediate neighbours yxxF, bglH
Sequences Protein DNA DNA_with_flanks
Genetic context
YxiE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxiE expression.png




























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

CcpA regulon, LicT regulon

The gene

Basic information

  • Locus tag: BSU39250

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: universal stress protein A family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
    • CcpA: transcription repression, (CcpA binding site overlaps -35 region) PubMed
    • LicT-dependent RNA switch (antitermination, lack of LicT-dependent antitermination in the presence of gucose due to the requirement of LicT to be phosphorylated by HPr PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Juliane Ollinger, Kyung-Bok Song, Haike Antelmann, Michael Hecker, John D Helmann
Role of the Fur regulon in iron transport in Bacillus subtilis.
J Bacteriol: 2006, 188(10);3664-73
[PubMed:16672620] [WorldCat.org] [DOI] (P p)

H Antelmann, C Scharf, M Hecker
Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis.
J Bacteriol: 2000, 182(16);4478-90
[PubMed:10913081] [WorldCat.org] [DOI] (P p)