Difference between revisions of "YngJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yngI]]'', ''[[ynzE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yngI]]'', ''[[ynzE]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18260 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18260 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yngJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yngJ_context.gif]]

Revision as of 10:22, 14 May 2013

  • Description: 3-methylbutanoyl-CoA dehydrogenase

Gene name yngJ
Synonyms
Essential no
Product 3-methylbutanoyl-CoA dehydrogenase
Function mother cell metabolism, leucine utilization
Gene expression levels in SubtiExpress: yngJ
MW, pI 40 kDa, 5.794
Gene length, protein length 1140 bp, 380 aa
Immediate neighbours yngI, ynzE
Sequences Protein DNA DNA_with_flanks
Genetic context
YngJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YngJ expression.png















Categories containing this gene/protein

utilization of amino acids, sporulation proteins

This gene is a member of the following regulons

SigE regulon

The gene

Basic information

  • Locus tag: BSU18260

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 3-methylbutanoyl-CoA --> 3-methylbut-2-enoyl-CoA PubMed
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3OWA (from B. anthracis, 37% identity, 54% similarity)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
    • expressed during sporulation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References