Difference between revisions of "SpoIIID"
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of mother cell gene expression | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of mother cell gene expression | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36420 spoIIID] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn], [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn], [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mbl]]'', ''[[usd]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mbl]]'', ''[[usd]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36420 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:spoIIID_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:spoIIID_context.gif]] | ||
Revision as of 14:03, 13 May 2013
- Description: transcriptional regulator (repressor or activator) of a subset of sigma-E-dependent genes
| Gene name | spoIIID |
| Synonyms | |
| Essential | no |
| Product | transcriptional regulator |
| Function | regulation of mother cell gene expression |
| Gene expression levels in SubtiExpress: spoIIID | |
| Metabolic function and regulation of this protein in SubtiPathways: Asp, Asn, Cell wall | |
| MW, pI | 10 kDa, 9.496 |
| Gene length, protein length | 279 bp, 93 aa |
| Immediate neighbours | mbl, usd |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transcription factors and their control, sporulation proteins
This gene is a member of the following regulons
The SpoIIID regulon
The gene
Basic information
- Locus tag: BSU36420
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binds its DNA targets as a monomeric protein (possible due to the two DNA-binding motifs) PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains: two DNA-binding regions: HTH at the N-terminus and a basic region near the C-terminus PubMed
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 2L0K (complex with DNA)
- UniProt: P15281
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
