Difference between revisions of "NrnA"

From SubtiWiki
Jump to: navigation, search
Line 20: Line 20:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytzJ]]'', ''[[ytpI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytzJ]]'', ''[[ytpI]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14885&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29250 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29250 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29250 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ytqI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ytqI_context.gif]]

Revision as of 13:35, 13 May 2013

Description: oligoribonuclease (nanoRNase), 3',5'-bisphosphate nucleotidase

Gene name nrnA
Synonyms ytqI
Essential no
Product oligoribonuclease (nanoRNase), 3',5'-bisphosphate nucleotidase
Function degradation of RNA oligonucleotides,
MW, pI 34 kDa, 4.668
Gene length, protein length 939 bp, 313 aa
Immediate neighbours ytzJ, ytpI
Sequences Protein DNA Advanced_DNA
Genetic context
YtqI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
NrnA expression.png
























Categories containing this gene/protein

Rnases

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU29250

Phenotypes of a mutant

The mutant requires cysteine PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • Adenosine 3',5'-bisphosphate + H2O = adenosine 5'-phosphate + phosphate (according to Swiss-Prot)
    • oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase PubMed
    • hydrolyze oligo(deoxy)ribonucleotides in a 5'-3' direction PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed