Difference between revisions of "GerE"

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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of [[SigK]]-dependent gene expression
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of [[SigK]]-dependent gene expression
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU28410 gerE]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28410 gerE]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ysmB]]'', ''[[ysmA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ysmB]]'', ''[[ysmA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14801&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28410 Advanced_DNA]
 
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Revision as of 13:31, 13 May 2013

  • Description: transcriptional regulator (repressor or activator) of a subset of sigma-K-dependent late spore coat genes

Gene name gerE
Synonyms
Essential no
Product transcriptional regulator (LuxR-FixJ family)
Function regulation of SigK-dependent gene expression
Gene expression levels in SubtiExpress: gerE
Function and regulation of this protein in SubtiPathways:
Phosphorelay, Protein secretion
MW, pI 8 kDa, 9.635
Gene length, protein length 222 bp, 74 aa
Immediate neighbours ysmB, ysmA
Sequences Protein DNA Advanced_DNA
Genetic context
GerE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
GerE expression.png















Categories containing this gene/protein

transcription factors and their control, germination

This gene is a member of the following regulons

SigK regulon

The GerE regulon

The gene

Basic information

  • Locus tag: BSU28410

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: LuxR-FixJ family of transcription regulators
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References