Difference between revisions of "YqeI"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU25650 yqeI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU25650 yqeI]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 9.476   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 9.476   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nadD]]'', ''[[aroD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nadD]]'', ''[[aroD]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14507&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU25650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU25650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU25650 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yqeI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yqeI_context.gif]]

Revision as of 13:21, 13 May 2013

  • Description: similar to predicted RNA-binding protein

Gene name yqeI
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yqeI
MW, pI 10 kDa, 9.476
Gene length, protein length 288 bp, 96 aa
Immediate neighbours nadD, aroD
Sequences Protein DNA Advanced_DNA
Genetic context
YqeI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YqeI expression.png
























Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU25650

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

  • The E. coli homolog: yhbY

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 1LN4 (the YhbY protein of E. coli, 41% identity, 62% similarity) PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

  • YqeI might be a RNA-binding protein PubMed. The homolog from E. coli associates to the 50S subunit of the ribosome and is involved in ribosome assembly Ecocyc

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Alison Hunt, Joy P Rawlins, Helena B Thomaides, Jeff Errington
Functional analysis of 11 putative essential genes in Bacillus subtilis.
Microbiology (Reading): 2006, 152(Pt 10);2895-2907
[PubMed:17005971] [WorldCat.org] [DOI] (P p)

Gerard J Ostheimer, Alice Barkan, Brian W Matthews
Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins.
Structure: 2002, 10(11);1593-601
[PubMed:12429100] [WorldCat.org] [DOI] (P p)