Difference between revisions of "YncD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || protection of the spore | |style="background:#ABCDEF;" align="center"|'''Function''' || protection of the spore | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17640 yncD] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Alternative nitrogen sources]''' | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncC]]'', ''[[yncE]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncC]]'', ''[[yncE]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17640 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17640 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17640 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yncD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yncD_context.gif]] | ||
Revision as of 12:55, 13 May 2013
- Description: spore coat alanine racemase
| Gene name | yncD |
| Synonyms | alrB |
| Essential | no |
| Product | spore coat alanine racemase |
| Function | protection of the spore |
| Gene expression levels in SubtiExpress: yncD | |
| Metabolic function and regulation of this protein in SubtiPathways: Alternative nitrogen sources | |
| MW, pI | 43 kDa, 9.593 |
| Gene length, protein length | 1182 bp, 394 aa |
| Immediate neighbours | yncC, yncE |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sporulation proteins, poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17640
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: L-alanine = D-alanine (according to Swiss-Prot)
- Protein family: alanine racemase family (according to Swiss-Prot)
- Paralogous protein(s): Alr
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- spore coat PubMed
Database entries
- Structure:
- UniProt: P94494
- KEGG entry: [3]
- E.C. number: 5.1.1.1
Additional information
Expression and regulation
- Operon: yncD (according to DBTBS)
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Peter T McKenney, Patrick Eichenberger
Dynamics of spore coat morphogenesis in Bacillus subtilis.
Mol Microbiol: 2012, 83(2);245-60
[PubMed:22171814]
[WorldCat.org]
[DOI]
(I p)
Kara J Pierce, Samson P Salifu, Martin Tangney
Gene cloning and characterization of a second alanine racemase from Bacillus subtilis encoded by yncD.
FEMS Microbiol Lett: 2008, 283(1);69-74
[PubMed:18399999]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading): 2003, 149(Pt 10);3023-3034
[PubMed:14523133]
[WorldCat.org]
[DOI]
(P p)
