Difference between revisions of "YkfC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism | |style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12990 ykfC] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 6.346 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 6.346 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykfB]]'', ''[[ykfD]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ykfB]]'', ''[[ykfD]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12990 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12990 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12990 Advanced_DNA] |
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Revision as of 12:37, 13 May 2013
- Description: D-glutamyl-L-amino acid peptidase
| Gene name | ykfC |
| Synonyms | |
| Essential | no |
| Product | D-glutamyl-L-amino acid peptidase |
| Function | cell wall metabolism |
| Gene expression levels in SubtiExpress: ykfC | |
| MW, pI | 32 kDa, 6.346 |
| Gene length, protein length | 888 bp, 296 aa |
| Immediate neighbours | ykfB, ykfD |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU12990
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: cleaves L-Ala-γ-D-Glu dipeptides from cell wall peptides PubMed
- Protein family: nlpC/p60 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O35010
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455]
[WorldCat.org]
[DOI]
(P p)
All publications: PubMed
