Difference between revisions of "OppC"
(→Biological materials) |
|||
| Line 13: | Line 13: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || initiation of sporulation, competence development | |style="background:#ABCDEF;" align="center"|'''Function''' || initiation of sporulation, competence development | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11450 oppC] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OppC OppC] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OppC OppC] | ||
| Line 25: | Line 25: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oppB]]'', ''[[oppD]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oppB]]'', ''[[oppD]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11450 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11450 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11450 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:oppC_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:oppC_context.gif]] | ||
Revision as of 12:32, 13 May 2013
- Description: oligopeptide ABC transporter (permease)
| Gene name | oppC |
| Synonyms | spo0KC |
| Essential | no |
| Product | oligopeptide ABC transporter (permease) |
| Function | initiation of sporulation, competence development |
| Gene expression levels in SubtiExpress: oppC | |
| Interactions involving this protein in SubtInteract: OppC | |
| Metabolic function and regulation of this protein in SubtiPathways: Alternative nitrogen sources | |
| MW, pI | 33 kDa, 10.107 |
| Gene length, protein length | 915 bp, 305 aa |
| Immediate neighbours | oppB, oppD |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
ABC transporters, utilization of nitrogen sources other than amino acids, genetic competence, phosphorelay, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11450
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transmembrane type-1 domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- Structure:
- UniProt: P24139
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant: BP68 (spc) available in Fabian Commichau's lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
