Difference between revisions of "YfmC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || iron uptake
 
|style="background:#ABCDEF;" align="center"|'''Function''' || iron uptake
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU07520 yfmC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07520 yfmC]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YfmC YfmC]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YfmC YfmC]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmD]]'', ''[[yfmB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfmD]]'', ''[[yfmB]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12581&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07520 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07520 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07520 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yfmC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yfmC_context.gif]]

Revision as of 12:20, 13 May 2013

Gene name yfmC
Synonyms
Essential no
Product iron/ citrate ABC transporter (binding protein)
Function iron uptake
Gene expression levels in SubtiExpress: yfmC
Interactions involving this protein in SubtInteract: YfmC
MW, pI 34 kDa, 7.879
Gene length, protein length 945 bp, 315 aa
Immediate neighbours yfmD, yfmB
Sequences Protein DNA Advanced_DNA
Genetic context
YfmC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfmC expression.png















Categories containing this gene/protein

ABC transporters, acquisition of iron, iron metabolism, membrane proteins

This gene is a member of the following regulons

Fur regulon

The gene

Basic information

  • Locus tag: BSU07520

Phenotypes of a mutant

  • poor growth with the Fe(III)-dicitrate as single source of iron PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: Fe/B12 periplasmic-binding domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References