Difference between revisions of "YesX"
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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of rhamnogalacturonan | |style="background:#ABCDEF;" align="center"|'''Function''' || utilization of rhamnogalacturonan | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07060 yesX] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 67 kDa, 5.223 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 67 kDa, 5.223 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesW]]'', ''[[yesY]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesW]]'', ''[[yesY]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07060 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07060 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07060 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:yesX_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yesX_context.gif]] | ||
Revision as of 12:19, 13 May 2013
- Description: rhamnogalacturonanlyase, degrades oligo- to disaccharides
| Gene name | yesX |
| Synonyms | |
| Essential | no |
| Product | rhamnogalacturonan lyase, degrades oligo- to disaccharides |
| Function | utilization of rhamnogalacturonan |
| Gene expression levels in SubtiExpress: yesX | |
| MW, pI | 67 kDa, 5.223 |
| Gene length, protein length | 1836 bp, 612 aa |
| Immediate neighbours | yesW, yesY |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU07060
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: polysaccharide lyase 11 family (according to Swiss-Prot)
- Paralogous protein(s): YesW
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- secreted (according to Swiss-Prot)
Database entries
- Structure: 2ZUY
- UniProt: O31527
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Sandrine Poncet, Maryline Soret, Peggy Mervelet, Josef Deutscher, Philippe Noirot
Transcriptional activator YesS is stimulated by histidine-phosphorylated HPr of the Bacillus subtilis phosphotransferase system.
J Biol Chem: 2009, 284(41);28188-28197
[PubMed:19651770]
[WorldCat.org]
[DOI]
(I p)
Akihito Ochiai, Takafumi Itoh, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases.
J Biol Chem: 2009, 284(15);10181-9
[PubMed:19193638]
[WorldCat.org]
[DOI]
(P p)
Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691]
[WorldCat.org]
[DOI]
(P p)
