Difference between revisions of "RpsN"

From SubtiWiki
Jump to: navigation, search
Line 8: Line 8:
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|23002217,12682299}}
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S14
 
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] S14
Line 37: Line 37:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
 
 
 
<br/><br/>
 
<br/><br/>
  
Line 59: Line 55:
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
essential {{PubMed|23002217,12682299}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 145: Line 141:
  
 
=References=
 
=References=
 
+
'''Additional publications:''' {{PubMed|23002217}}
 
<pubmed>17163968,8635744,9371452, 19648245 ,19653700 20208344 11948165 22517742</pubmed>
 
<pubmed>17163968,8635744,9371452, 19648245 ,19653700 20208344 11948165 22517742</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:35, 26 September 2012

Gene name rpsN
Synonyms
Essential yes PubMed
Product ribosomal protein S14
Function translation
Gene expression levels in SubtiExpress: rpsN
Interactions involving this protein in SubtInteract: RpsN
MW, pI 7 kDa, 10.914
Gene length, protein length 183 bp, 61 aa
Immediate neighbours rplE, rpsH
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RpsN context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RpsN expression.png















Categories containing this gene/protein

translation, essential genes, phosphoproteins

This gene is a member of the following regulons

stringent response

The gene

Basic information

  • Locus tag: BSU01290

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ribosomal protein S14P family (according to Swiss-Prot) Zinc-binding S14P subfamily (according to Swiss-Prot)
  • Paralogous protein(s): YhzA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
    • phosphorylated on Arg-41 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
    • SigA two promoters, about 140bp and 200bp upstream of the start codon PubMed
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed