Difference between revisions of "Abf2"
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | {{SubtiWiki regulon|[[AraR regulon]]}} | + | {{SubtiWiki regulon|[[AraR regulon]]}}, |
| + | {{SubtiWiki regulon|[[CcpA regulon]]}} | ||
=The gene= | =The gene= | ||
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* '''Regulation:''' | * '''Regulation:''' | ||
** induced by arabinose ([[AraR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed] | ** induced by arabinose ([[AraR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed] | ||
| + | ** repressed by glucose ([[CcpA]]) {{PubMed|22900538}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[CcpA]]: transcription repression {{PubMed|22900538}} | ||
** [[AraR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed] | ** [[AraR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/14973026 PubMed] | ||
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=References= | =References= | ||
| − | <pubmed>14973026,18757805,20525796</pubmed> | + | <pubmed>14973026,18757805,20525796 22900538</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:48, 23 August 2012
- Description: alpha-L-arabinofuranosidase
| Gene name | abf2 |
| Synonyms | xsa |
| Essential | no |
| Product | alpha-L-arabinofuranosidase |
| Function | arabinan degradation |
| Gene expression levels in SubtiExpress: abf2 | |
| MW, pI | 56 kDa, 5.329 |
| Gene length, protein length | 1485 bp, 495 aa |
| Immediate neighbours | trxA, etfA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU28510
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)
- Protein family: glycosyl hydrolase 51 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P94552
- KEGG entry: [3]
- E.C. number: 3.2.1.55
Additional information
Expression and regulation
- Operon: abf2 PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
