Difference between revisions of "YacO"

From SubtiWiki
Jump to: navigation, search
Line 26: Line 26:
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yacO_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yacO_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 +
|-
 +
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rlmB_115269_116018_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yacO_expression.png|500px]]
 
|-
 
|-
 
|}
 
|}
  
 
__TOC__
 
__TOC__
 +
<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
<br/><br/><br/><br/>
 +
  
 
<br/><br/><br/><br/><br/><br/>
 
<br/><br/><br/><br/><br/><br/>

Revision as of 12:44, 18 April 2012

  • Description: putative 23S rRNA methyltransferase

Gene name yacO
Synonyms
Essential no
Product putative 23S rRNA methyltransferase
Function unknown
Metabolic function and regulation of this protein in SubtiPathways:
tRNA charging
MW, pI 27 kDa, 8.633
Gene length, protein length 747 bp, 249 aa
Immediate neighbours mrnC, yacP
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YacO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YacO expression.png




























Categories containing this gene/protein

translation

This gene is a member of the following regulons

T-box

The gene

Basic information

  • Locus tag: BSU00960

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: RNA methyltransferase trmH family (according to Swiss-Prot)
  • Paralogous protein(s): YsgA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism: T-box, overlaps a transcription terminator upstream of cysE: transcription antitermination PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References