Difference between revisions of "YuxJ"

From SubtiWiki
Jump to: navigation, search
Line 101: Line 101:
 
* '''Operon:''' ''[[yuxJ]]'' {{PubMed|21815947}}
 
* '''Operon:''' ''[[yuxJ]]'' {{PubMed|21815947}}
  
* '''[[Sigma factor]]:'''  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuxJ_3232640_3233818_1 yuxJ] {{PubMed|22383849}}
 +
 
 +
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 16:19, 16 April 2012

  • Description: similar to multidrug-efflux transporter

Gene name yuxJ
Synonyms yugC
Essential no
Product unknown
Function unknown
MW, pI 42 kDa, 10.454
Gene length, protein length 1176 bp, 392 aa
Immediate neighbours kapD, pbpD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YuxJ context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

transporters/ other, resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU31480

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: major facilitator superfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the mRNA is substantially stabilized upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947