Difference between revisions of "Hfq"

From SubtiWiki
Jump to: navigation, search
(Reviews)
Line 84: Line 84:
 
=== Database entries ===
 
=== Database entries ===
  
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3HSB 3HSB] (complex with an RNA aptamer)
+
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3HSB 3HSB] (complex with an RNA aptamer) {{PubMed|22053080}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31796 O31796]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31796 O31796]
Line 129: Line 129:
  
 
==Original publications==
 
==Original publications==
<pubmed>12850135, 20445260 </pubmed>
+
<pubmed>12850135, 20445260 22053080 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:30, 6 November 2011

  • Description: RNA chaperone

Gene name hfq
Synonyms ymaH
Essential no
Product RNA chaperone
Function unknown
MW, pI 8 kDa, 8.698
Gene length, protein length 219 bp, 73 aa
Immediate neighbours miaA, ymzC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YmaH context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

RNA chaperones

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU17340

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: hfq family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 3HSB (complex with an RNA aptamer) PubMed
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation: repressed by glucose (7.7-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant: GP22 (cat), available in the Stülke lab
  • Expression vector:
  • lacZ fusion: pGP460 (in pAC7), available in Stülke lab
  • GFP fusion:
  • two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews


Original publications