Difference between revisions of "SscA"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' small spore protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''sscA'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yhzE '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || small spore protein |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || spore coat assembly |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 2.98 kDa, 5.27 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 2.98 kDa, 5.27 | ||
| Line 35: | Line 35: | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[SigK regulon]]}}, | ||
| + | {{SubtiWiki regulon|[[GerE rgulon]]}} | ||
| Line 44: | Line 46: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * poor [[germination]] | ||
=== Database entries === | === Database entries === | ||
| Line 52: | Line 55: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| Line 77: | Line 79: | ||
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
* '''Localization:''' | * '''Localization:''' | ||
| Line 95: | Line 97: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''sscA'' {{PubMed|21670523}} |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigK]] {{PubMed|21670523}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expressed late during sporulation in the mother cell ([[SigK]], [[GerE]]) {{PubMed|21670523}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| + | ** [[GerE]]: transcription activation {{PubMed|21670523}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 124: | Line 128: | ||
=References= | =References= | ||
| − | <pubmed> 20156992 </pubmed> | + | <pubmed> 20156992 21670523 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 16:32, 1 July 2011
- Description: small spore protein
| Gene name | sscA |
| Synonyms | yhzE |
| Essential | no |
| Product | small spore protein |
| Function | spore coat assembly |
| MW, pI | 2.98 kDa, 5.27 |
| Gene length, protein length | 87 bp, 28 amino acids |
| Immediate neighbours | prsA, yhaJ |
| Gene sequence (+200bp) | Protein sequence |
| Genetic context File:YhzE context.gif | |
Contents
Categories containing this gene/protein
toxins, antitoxins and immunity against toxins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
- poor germination
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
Database entries
- Structure:
- UniProt: C0H3Y2
- KEGG entry:
- E.C. number:
Additional information
Expression and regulation
- Operon: sscA PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Takeko Kodama, Takeshi Matsubayashi, Tadayoshi Yanagihara, Hiroyuki Komoto, Katsutoshi Ara, Katsuya Ozaki, Ritsuko Kuwana, Daisuke Imamura, Hiromu Takamatsu, Kazuhito Watabe, Junichi Sekiguchi
A novel small protein of Bacillus subtilis involved in spore germination and spore coat assembly.
Biosci Biotechnol Biochem: 2011, 75(6);1119-28
[PubMed:21670523]
[WorldCat.org]
[DOI]
(I p)
Elizabeth M Fozo, Kira S Makarova, Svetlana A Shabalina, Natalya Yutin, Eugene V Koonin, Gisela Storz
Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families.
Nucleic Acids Res: 2010, 38(11);3743-59
[PubMed:20156992]
[WorldCat.org]
[DOI]
(I p)
