Difference between revisions of "YyaF"

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= Categories containing this gene/protein =
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{{SubtiWiki category|[[GTP-binding proteins]]}},
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{{SubtiWiki category|[[proteins of unknown function]]}}
 
=The protein=
 
=The protein=
  

Revision as of 00:23, 1 December 2010

  • Description: GTP-binding protein/ GTPase

Gene name yyaF
Synonyms
Essential no
Product GTP-binding protein/ GTPase
Function unknown
MW, pI 39 kDa, 4.659
Gene length, protein length 1098 bp, 366 aa
Immediate neighbours rpsF, yyaE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YyaF context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU40920

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

Categories containing this gene/protein

GTP-binding proteins, proteins of unknown function

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Binds and hydrolyzes GTP and readily exchanges GDP for GTP
  • Protein family: EngD subfamily (according to Swiss-Prot) Era/Obg family

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • RelA dependent downregulation (Class I) during stringent response PubMed
    • ComK: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
    • for expression/ purification from B. subtilis with N-terminal Strep-tag, for SPINE, in pGP380: pGP836, available in Stülke lab
    • for expression/ purification from E. coli with N-terminal His-tag, in pWH844: pGP844, available in Stülke lab
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Naotake Ogasawara, Nara, Japan

Your additional remarks

References