Difference between revisions of "SknR"
| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' transcription repressor of the ''[[yqaF]]-[[yqdA]]-[[yqaG]]-[[yqaH]]-[[yqaI]]-[[yqaJ]]-[[yqaK]]-[[yqaL]]-[[yqaM]]-[[yqaN]]'' operon of the skin element (Xre family) <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 38: | Line 38: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * essential in the wild type background (due to overexpression of the toxic proteins [[YqaH]] and [[YqaM]]) {{PubMed|20889742}} | ||
| + | * no phenotype if deleted with the complete skin element {{PubMed|20889742}} | ||
=== Database entries === | === Database entries === | ||
| Line 52: | Line 54: | ||
=== Basic information/ Evolution === | === Basic information/ Evolution === | ||
| − | * '''Catalyzed reaction/ biological activity:''' | + | * '''Catalyzed reaction/ biological activity:''' binds the yqaF promoter region to repress transcription of the ''[[yqaF]]-[[yqdA]]-[[yqaG]]-[[yqaH]]-[[yqaI]]-[[yqaJ]]-[[yqaK]]-[[yqaL]]-[[yqaM]]-[[yqaN]]'' operon {{PubMed|20889742}} |
* '''Protein family:''' | * '''Protein family:''' | ||
| − | * '''Paralogous protein(s):''' | + | * '''Paralogous protein(s):''' [[YonR]], [[Xre]] |
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 117: | Line 119: | ||
=References= | =References= | ||
| − | + | <pubmed>20889742 </pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:18, 11 October 2010
- Description: transcription repressor of the yqaF-yqdA-yqaG-yqaH-yqaI-yqaJ-yqaK-yqaL-yqaM-yqaN operon of the skin element (Xre family)
| Gene name | yqaE |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| MW, pI | 13 kDa, 5.42 |
| Gene length, protein length | 348 bp, 116 aa |
| Immediate neighbours | yqaF, yqaD |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU26350
Phenotypes of a mutant
- essential in the wild type background (due to overexpression of the toxic proteins YqaH and YqaM) PubMed
- no phenotype if deleted with the complete skin element PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binds the yqaF promoter region to repress transcription of the yqaF-yqdA-yqaG-yqaH-yqaI-yqaJ-yqaK-yqaL-yqaM-yqaN operon PubMed
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P45902
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742]
[WorldCat.org]
[DOI]
(I p)
