Difference between revisions of "SpoIIIC"
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− | * '''Description:''' RNA polymerase sporulation-specific sigma factor ( | + | * '''Description:''' RNA polymerase sporulation-specific sigma factor ([[SigK]]) (C-terminal half), other part: ''[[spoIVCB]]''<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Product''' || RNA polymerase sporulation-specific sigma factor <br/>( | + | |style="background:#ABCDEF;" align="center"| '''Product''' || RNA polymerase sporulation-specific sigma factor <br/>([[SigK]]) (C-terminal half) |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || late mother cell-specific gene expression | |style="background:#ABCDEF;" align="center"|'''Function''' || late mother cell-specific gene expression | ||
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=Expression and regulation= | =Expression and regulation= | ||
− | * '''Operon:''' | + | * '''Operon:''' ''[[sigK]]'' (composed of ''[[spoIVCB]]-[[spoIIIC]]'') {{PubMed|2536191}} |
− | * '''[[Sigma factor]]:''' [[SigK]] {{PubMed| | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,2841290}}, [[SigK]] {{PubMed|2841290}} |
* '''Regulation:''' | * '''Regulation:''' | ||
+ | ** expressed during sporulation in the mother cell ([[SigE]], [[SigK]], [[GerE]], [[SpoIIID]]) {{PubMed|15699190,2841290,10075739,7966271}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
+ | ** [[GerE]]: transcription repression {{PubMed|10075739}} | ||
+ | ** [[SpoIIID]]: transcription activation {{PubMed|7966271}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
+ | ** [[SigK]] is activated by processing of membrane-bound pro-[[SigK]] by the [[SpoIVFB]] metalloprotease {{PubMed|19805276}} | ||
+ | ** ''spoIVCB'' and ''[[spoIIIC]]'' form a composite gene in the mother cell during sporulation by excising the intervening DNA sequence. | ||
=Biological materials = | =Biological materials = |
Revision as of 19:59, 24 November 2009
- Description: RNA polymerase sporulation-specific sigma factor (SigK) (C-terminal half), other part: spoIVCB
Gene name | spoIIIC |
Synonyms | sigK, spoIVD, spoIVE |
Essential | no |
Product | RNA polymerase sporulation-specific sigma factor (SigK) (C-terminal half) |
Function | late mother cell-specific gene expression |
MW, pI | 16 kDa, 9.608 |
Gene length, protein length | 414 bp, 138 aa |
Immediate neighbours | yqaB, yrkS |
Gene sequence (+200bp) | Protein sequence |
Genetic context This image was kindly provided by SubtiList
|
Contents
The gene
Basic information
- Locus tag: BSU26390
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P12254
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References