Difference between revisions of "YesX"
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' [[yesS]]-[[yesT]]-[[yesU]]-[[yesV]]-[[yesW]]-[[yesX]]-[[yesY]]-[[yesZ]] |
| + | {{PubMed|19651770}} | ||
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
| − | * '''Regulation:''' | + | * '''Regulation:''' induced by pectin ([[YesS]]) {{PubMed|19651770}} |
| − | + | ||
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' [[YesS]]: transcriptional activation {{PubMed|19651770}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 117: | Line 118: | ||
=References= | =References= | ||
| − | + | <pubmed> 19651770 17449691,, 19193638 </pubmed> | |
| − | <pubmed>17449691,, 19193638 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 09:57, 29 August 2009
- Description: rhamnogalacturonanlyase, degrades oligo- to disaccharides
| Gene name | yesX |
| Synonyms | |
| Essential | no |
| Product | rhamnogalacturonan lyase, degrades oligo- to disaccharides |
| Function | utilization of rhamnogalacturonan |
| MW, pI | 67 kDa, 5.223 |
| Gene length, protein length | 1836 bp, 612 aa |
| Immediate neighbours | yesW, yesY |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU07060
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: polysaccharide lyase 11 family (according to Swiss-Prot)
- Paralogous protein(s): YesW
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: secreted (according to Swiss-Prot)
Database entries
- Structure: 2ZUY
- UniProt: O31527
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Sandrine Poncet, Maryline Soret, Peggy Mervelet, Josef Deutscher, Philippe Noirot
Transcriptional activator YesS is stimulated by histidine-phosphorylated HPr of the Bacillus subtilis phosphotransferase system.
J Biol Chem: 2009, 284(41);28188-28197
[PubMed:19651770]
[WorldCat.org]
[DOI]
(I p)
Akihito Ochiai, Takafumi Itoh, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases.
J Biol Chem: 2009, 284(15);10181-9
[PubMed:19193638]
[WorldCat.org]
[DOI]
(P p)
Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691]
[WorldCat.org]
[DOI]
(P p)
