Difference between revisions of "YvdF"
| Line 80: | Line 80: | ||
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1J0J 1J0J] (from G. stearothermophilus, 56% identity, complex with maltotetraose), [http://www.rcsb.org/pdb/explore.do?structureId=1J0H 1J0H] (from G. stearothermophilus, 56% identity) | * '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1J0J 1J0J] (from G. stearothermophilus, 56% identity, complex with maltotetraose), [http://www.rcsb.org/pdb/explore.do?structureId=1J0H 1J0H] (from G. stearothermophilus, 56% identity) | ||
| − | * ''' | + | * '''UniProt:''' [http://www.uniprot.org/uniprot/O06988 O06988] |
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU34620] | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU34620] | ||
Revision as of 14:41, 20 July 2009
- Description: glucan 1,4-alpha-maltohydrolase, neopullulanase, maltogenic amylase
| Gene name | yvdF |
| Synonyms | |
| Essential | no |
| Product | glucan 1,4-alpha-maltohydrolase, neopullulanase, maltogenic amylase |
| Function | starch and maltodextrin utilization |
| Metabolic function and regulation of this protein in SubtiPathways: Sugar catabolism | |
| MW, pI | 68 kDa, 5.178 |
| Gene length, protein length | 1767 bp, 589 aa |
| Immediate neighbours | mdxE, yvdE |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU34620
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: BbmA subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: cytoplasm (according to Swiss-Prot), on both sides of the cytoplasmic membrane and in the periplasm during vegetative growth but in the cytoplasm of prespores PubMed
Database entries
- Structure: 1J0J (from G. stearothermophilus, 56% identity, complex with maltotetraose), 1J0H (from G. stearothermophilus, 56% identity)
- UniProt: O06988
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Jae-Hoon Shim, Jong-Tae Park, Jung-Sun Hong, Ki Woo Kim, Myo-Jeong Kim, Jung-Hyuk Auh, Young-Wan Kim, Cheon-Seok Park, Winfried Boos, Jung-Wan Kim, Kwan-Hwa Park
Role of maltogenic amylase and pullulanase in maltodextrin and glycogen metabolism of Bacillus subtilis 168.
J Bacteriol: 2009, 191(15);4835-44
[PubMed:19465663]
[WorldCat.org]
[DOI]
(I p)
Stefan Schönert, Sabine Seitz, Holger Krafft, Eva-Anne Feuerbaum, Iris Andernach, Gabriele Witz, Michael K Dahl
Maltose and maltodextrin utilization by Bacillus subtilis.
J Bacteriol: 2006, 188(11);3911-22
[PubMed:16707683]
[WorldCat.org]
[DOI]
(P p)
Do-Yeon Kim, Choon-Hwan Cha, Wan-Seok Oh, Young-Jun Yoon, Jung-Wan Kim
Expression of the promoter for the maltogenic amylase gene in Bacillus subtilis 168.
J Microbiol: 2004, 42(4);319-27
[PubMed:15650689]
[WorldCat.org]
(P p)
