YvlC - Revision history

134.76.38.147 at 14:54, 2 April 2014

2014-04-02T14:54:23Z

Jstuelk at 17:41, 30 August 2013

2013-08-30T17:41:59Z

Jstuelk at 17:39, 30 August 2013

2013-08-30T17:39:27Z

Jstuelk at 17:35, 30 August 2013

2013-08-30T17:35:14Z

Jstuelk at 21:27, 18 June 2013

2013-06-18T21:27:45Z

134.76.70.252 at 14:41, 16 May 2013

2013-05-16T14:41:13Z

134.76.70.252 at 11:23, 14 May 2013

2013-05-14T11:23:16Z

134.76.70.252 at 13:57, 13 May 2013

2013-05-13T13:57:53Z

134.76.70.252 at 16:26, 7 August 2012

2012-08-07T16:26:23Z

134.76.70.252 at 10:11, 23 April 2012

2012-04-23T10:11:14Z

← Older revision		Revision as of 14:54, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' similar to phage shock protein C, involved in resistance to nisin <br/><br/>~~	+	{{#bank: YvlC}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yvlC''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| resistance to nisin~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35110 yvlC]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 7 kDa, 9.854~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 195 bp, 65 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yvlD]]'', ''[[yvlB]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35110 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yvlC_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvlC_3607123_3607320_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yvlC_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35110]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigW regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU35110
−
−	~~===Phenotypes of a mutant ===~~
−	* more sensitive to nisin {{PubMed\|23980836}}
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yvlABCD.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14118]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' PspC family
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O34719 O34719]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU35110]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' [[yvlA]]-[[yvlB]]-[[yvlC]]-[[yvlD]] {{PubMed\|9987136}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvlC_3607123_3607320_-1 yvlC] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigW]] {{PubMed\|9987136,12207695}}
−
−	* '''Regulation:'''
−	** induced by cell wall stress ([[SigW]]) {{PubMed\|9987136,12207695}}
−	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed], indirect regulation by [[AbrB]] {{PubMed\|20817675}}
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>12076816,9987136,12207695 220817675 23980836</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to phage shock protein A, involved in resistance to nisin <br/><br/>
+* '''Description:''' similar to phage shock protein C, involved in resistance to nisin <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 67: / Line 67: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:''' PspA family
+* '''Protein family:''' PspC family
-* '''Paralogous protein(s):''' [[LiaH]]
+* '''Paralogous protein(s):'''
 === Extended information on the protein ===

@@ Line 1: / Line 1: @@
-* '''Description:''' involved in resistance to nisin <br/><br/>
+* '''Description:''' similar to phage shock protein A, involved in resistance to nisin <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 67: / Line 67: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:'''
+* '''Protein family:''' PspA family
-* '''Paralogous protein(s):'''
+* '''Paralogous protein(s):''' [[LiaH]]
 === Extended information on the protein ===

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' involved in resistance to nisin <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 12: / Line 12: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to nisin
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35110 yvlC]
@@ Line 50: / Line 50: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 58: / Line 59: @@
 === Additional information===
@@ Line 135: / Line 134: @@
 =References=
-<pubmed>12076816,9987136,12207695 220817675</pubmed>
+<pubmed>12076816,9987136,12207695 220817675 23980836</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 88: / Line 84: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 109: / Line 105: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvlC_3607123_3607320_-1 yvlC] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigW]] {{PubMed|9987136,12207695}}
+* '''[[Sigma factor]]:''' [[SigW]] {{PubMed|9987136,12207695}}
 * '''Regulation:'''
@@ Line 139: / Line 135: @@
 =References=
-<pubmed>12076816,9987136,12207695 </pubmed>
+<pubmed>12076816,9987136,12207695 220817675</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvlC_3607123_3607320_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvlC_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvlC_3607123_3607320_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvlC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35110]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvlD]]'', ''[[yvlB]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35110 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35110 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35110 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35110 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yvlC_context.gif]]

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 9.854