YvbA - Revision history

Umaeder: Undo revision 90566 by Umaeder (Talk)

2009-06-11T12:33:21Z

Undo revision 90566 by Umaeder (Talk)

Umaeder at 11:40, 11 June 2009

2009-06-11T11:40:23Z

Sroppel: YvbA moved to SdpR

2009-02-03T11:09:30Z

YvbA moved to SdpR

New page

#REDIRECT [[SdpR]]

← Older revision		Revision as of 12:33, 11 June 2009
Line 1:		Line 1:
−	* '''Description:~~''' major component of biofilm matrix, translocation-dependent antimicrobial spore component <br/><br/>~~	+	{{#bank: YvbA}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''tasA''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''cotN, yqhF ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| major component of biofilm matrix~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biofilm formation~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 28 kDa, 5.442~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 783 bp, 261 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[sinR]]'', ''[[sipW]]''~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14393]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:tasA_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/>~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU24620
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yqxM-sipW-tasA.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11697]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' peptidase M73 family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:''' extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed], membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''Swiss prot entry:'''
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU24620]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[yqxM]]-[[sipW]]-[[tasA]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
−
−	* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
−
−	* '''Regulation:''' repressed by [[SinR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed], repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
−	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10464223,17720793 PubMed]
−
−	* '''Regulatory mechanism:''' [[SinR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16469701 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10464223,17720793 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed>18957862 12107147 18763711, </pubmed>~~
−	# Voigt et al. (2009) Cell physiology and protein secretion of ''Bacillus licheniformis'' compared to ''Bacillus subtilis''. ''J Mol Microbiol Biotechnol.'' '''16:''' 53-68 [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
−	# Mäder et al. (2002) Transcriptome and Proteome Analysis of ''Bacillus subtilis'' Gene Expression Modulated by Amino Acid Availability. ''J. Bacteriol'' '''184:''' 1844288-4295 [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
−	# Hahne et al. (2008) From complementarity to comprehensiveness - targeting the membrane proteome of growing ''Bacillus subtilis'' by divergent approaches. Proteomics '''8:''' 4123-4136 [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]~~

← Older revision		Revision as of 11:40, 11 June 2009
Line 1:		Line 1:
−	#~~REDIRECT~~ [[~~SdpR~~]]	+	* '''Description:''' major component of biofilm matrix, translocation-dependent antimicrobial spore component <br/><br/>
		+
		+	{\| align="right" border="1" cellpadding="2"
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Gene name'''
		+	\|''tasA''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''cotN, yqhF ''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| major component of biofilm matrix
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| biofilm formation
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 28 kDa, 5.442
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 783 bp, 261 aa
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[sinR]]'', ''[[sipW]]''
		+	\|-
		+	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB14393]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
		+	\|-
		+	\|colspan="2" \| '''Genetic context''' <br/> [[Image:tasA_context.gif]]
		+	<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
		+	\|-
		+	\|}
		+
		+	__TOC__
		+
		+	<br/><br/>
		+
		+	=The gene=
		+
		+	=== Basic information ===
		+
		+	* '''Locus tag:''' BSU24620
		+
		+	===Phenotypes of a mutant ===
		+
		+	=== Database entries ===
		+
		+	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yqxM-sipW-tasA.html]
		+
		+	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11697]
		+
		+	=== Additional information===
		+
		+
		+	=The protein=
		+
		+	=== Basic information/ Evolution ===
		+
		+	* '''Catalyzed reaction/ biological activity:'''
		+
		+	* '''Protein family:''' peptidase M73 family (according to Swiss-Prot)
		+
		+	* '''Paralogous protein(s):'''
		+
		+	=== Extended information on the protein ===
		+
		+	* '''Kinetic information:'''
		+
		+	* '''Domains:'''
		+
		+	* '''Modification:'''
		+
		+	* '''Cofactor(s):'''
		+
		+	* '''Effectors of protein activity:'''
		+
		+	* '''Interactions:'''
		+
		+	* '''Localization:''' extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed], membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
		+
		+	=== Database entries ===
		+
		+	* '''Structure:'''
		+
		+	* '''Swiss prot entry:'''
		+
		+	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU24620]
		+
		+	* '''E.C. number:'''
		+
		+	=== Additional information===
		+
		+	=Expression and regulation=
		+
		+	* '''Operon:''' ''[[yqxM]]-[[sipW]]-[[tasA]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
		+
		+	* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
		+
		+	* '''Regulation:''' repressed by [[SinR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed], repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
		+	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10464223,17720793 PubMed]
		+
		+	* '''Regulatory mechanism:''' [[SinR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16469701 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10464223,17720793 PubMed]
		+
		+	* '''Additional information:'''
		+
		+	=Biological materials =
		+
		+	* '''Mutant:'''
		+
		+	* '''Expression vector:'''
		+
		+	* '''lacZ fusion:'''
		+
		+	* '''GFP fusion:'''
		+
		+	* '''two-hybrid system:'''
		+
		+	* '''Antibody:'''
		+
		+	=Labs working on this gene/protein=
		+
		+	=Your additional remarks=
		+
		+	=References=
		+
		+	<pubmed>18957862 12107147 18763711, </pubmed>
		+	# Voigt et al. (2009) Cell physiology and protein secretion of ''Bacillus licheniformis'' compared to ''Bacillus subtilis''. ''J Mol Microbiol Biotechnol.'' '''16:''' 53-68 [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
		+	# Mäder et al. (2002) Transcriptome and Proteome Analysis of ''Bacillus subtilis'' Gene Expression Modulated by Amino Acid Availability. ''J. Bacteriol'' '''184:''' 1844288-4295 [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
		+	# Hahne et al. (2008) From complementarity to comprehensiveness - targeting the membrane proteome of growing ''Bacillus subtilis'' by divergent approaches. Proteomics '''8:''' 4123-4136 [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
		+	# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]