YqaK - Revision history

134.76.38.147 at 14:18, 2 April 2014

2014-04-02T14:18:35Z

Jstuelk at 20:07, 7 July 2013

2013-07-07T20:07:53Z

134.76.70.252 at 14:00, 16 May 2013

2013-05-16T14:00:55Z

134.76.70.252 at 10:48, 14 May 2013

2013-05-14T10:48:24Z

134.76.70.252 at 13:23, 13 May 2013

2013-05-13T13:23:29Z

134.76.70.252 at 14:08, 7 August 2012

2012-08-07T14:08:00Z

134.76.70.252 at 09:27, 20 April 2012

2012-04-20T09:27:51Z

134.76.70.252 at 11:57, 16 April 2012

2012-04-16T11:57:55Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-01-27T19:18:02Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

134.76.70.252 at 14:30, 25 January 2012

2012-01-25T14:30:26Z

← Older revision		Revision as of 14:18, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' similar to phage-related protein, skin element <br/><br/>~~	+	{{#bank: YqaK}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yqaK''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26280 yqaK]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 32 kDa, 5.076~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 852 bp, 284 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yqaL]]'', ''[[yqaJ]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU26280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU26280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU26280 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yqaK_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yqaK_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26280]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[Skin element]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SknR regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU26280
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11262]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P45908 P45908]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU26280]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[yqaF]]-[[yqdA]]-[[yqaG]]-[[yqaH]]-[[yqaI]]-[[yqaJ]]-[[yqaK]]-[[yqaL]]-[[yqaM]]-[[yqaN]]'' {{PubMed\|20889742}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 yqaK] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigA]] {{PubMed\|20889742}}
−
−	* '''Regulation:'''
−	** not expressed during normal growth ([[SknR]]) {{PubMed\|20889742}}
−
−	* '''Regulatory mechanism:'''
−	** [[SknR]]: transcription repression {{PubMed\|20889742}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 20889742 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 109: / Line 105: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 yqaK] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigA]]  {{PubMed|20889742}}
+* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|20889742}}
 * '''Regulation:'''

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yqaK_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yqaK_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26280]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqaL]]'', ''[[yqaJ]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU26280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU26280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU26280 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU26280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU26280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU26280 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yqaK_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU26280 yqaK]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU26280 yqaK]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 5.076
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqaL]]'', ''[[yqaJ]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14569&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU26280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU26280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU26280 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yqaK_context.gif]]

@@ Line 97: / Line 97: @@
 * '''Operon:'''  ''[[yqaF]]-[[yqdA]]-[[yqaG]]-[[yqaH]]-[[yqaI]]-[[yqaJ]]-[[yqaK]]-[[yqaL]]-[[yqaM]]-[[yqaN]]''  {{PubMed|20889742}}
-* '''[[Sigma factor]]:''' [[SigA]]  {{PubMed|20889742}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 yqaK] {{PubMed|22383849}}
 * '''Regulation:'''
@@ Line 105: / Line 107: @@
 ** [[SknR]]: transcription repression  {{PubMed|20889742}}
 * '''Additional information:'''
 =Biological materials =

← Older revision		Revision as of 19:18, 27 January 2012
Line 42:		Line 42:

	* '''Locus tag:''' BSU26280		* '''Locus tag:''' BSU26280
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

← Older revision		Revision as of 14:30, 25 January 2012
Line 42:		Line 42:

	* '''Locus tag:''' BSU26280		* '''Locus tag:''' BSU26280
		+
		+	[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqaK_2695173_2696027_-1 Expression]

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===