YidC2 - Revision history

Jstuelk: /* Original publications */

2015-07-08T08:13:12Z

‎Original publications

Jstuelk: /* Reviews */

2015-06-12T16:04:46Z

‎Reviews

Jstuelk: /* Original publications */

2015-04-24T14:53:58Z

‎Original publications

Jstuelk: /* Original publications */

2015-04-10T10:59:31Z

‎Original publications

Jstuelk: /* Original publications */

2014-11-02T15:41:37Z

‎Original publications

Jstuelk at 14:29, 19 October 2014

2014-10-19T14:29:19Z

134.76.38.147 at 14:09, 2 April 2014

2014-04-02T14:09:26Z

Jstuelk at 10:30, 21 January 2014

2014-01-21T10:30:07Z

Jstuelk at 10:28, 21 January 2014

2014-01-21T10:28:22Z

Jstuelk at 10:14, 21 January 2014

2014-01-21T10:14:29Z

← Older revision		Revision as of 08:13, 8 July 2015
Line 1:		Line 1:
−	* '''Description:~~''' Sec-independent membrane protein translocase, required for development of [[genetic competence]]<br/><br/>~~	+	{{#bank: YidC2}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yidC2''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yqjG, oxaAB ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| Sec-independent membrane protein translocase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| membrane insertion of proteins and [[protein secretion]]~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 30 kDa, 9.903~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 825 bp, 275 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[mifM]]'', ''[[yqjF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23890 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23890 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23890 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yqjG_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAB_2483904_2484731_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yqjG_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23890]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[protein secretion]]}},~~
−	~~{{SubtiWiki category\|[[genetic competence]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[MifM regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU23890
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23890&redirect=T BSU23890]
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yqjG.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11736]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' YidC/Oxa1/Alb3 family {{PubMed\|20800571,21194367,15802250}}
−
−	* '''Paralogous protein(s):''' [[SpoIIIJ]], one of the two proteins has to be present for viability [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** membrane {{PubMed\|22864117}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23890&redirect=T BSU23890]
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54544 P54544]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU23890]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[mifM]]-[[yidC2]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAB_2483904_2484731_1 yidC2] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** repressed by large amounts of [[SpoIIIJ]], induced by small amounts of [[SpoIIIJ]] ([[MifM]]) {{PubMed\|19779460}}
−
−	* '''Regulatory mechanism:'''
−	** [[MifM]]: "attenuation mechanism", an mRNA hairpin of the ''yqjG'' transcript unfold upon translation arrest of [[MifM]] at decreased [[SpoIIIJ]] levels {{PubMed\|19779460}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~==Reviews==~~
−	~~<pubmed>22688815 20800571,21194367,15802250 25947384</pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636 25903689</pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 136: / Line 136: @@
 =References=
 ==Reviews==
-<pubmed>22688815 20800571,21194367,15802250</pubmed>
+<pubmed>22688815 20800571,21194367,15802250 25947384</pubmed>
 == Original publications ==
 <pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636 25903689</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 138: / Line 138: @@
 <pubmed>22688815 20800571,21194367,15802250</pubmed>
 == Original publications ==
-<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636</pubmed>
+<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636 25903689</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 138: / Line 138: @@
 <pubmed>22688815 20800571,21194367,15802250</pubmed>
 == Original publications ==
-<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 </pubmed>
+<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636</pubmed>
 [[Category:Protein-coding genes]]

@@ Line 138: / Line 138: @@
 <pubmed>22688815 20800571,21194367,15802250</pubmed>
 == Original publications ==
-<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 </pubmed>
+<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 52: / Line 52: @@
 === Database entries ===
 * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yqjG.html]
@@ Line 87: / Line 88: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 1: / Line 1: @@
-* '''Description:''' Sec-independent membrane protein translocase, required for competence development<br/><br/>
+* '''Description:''' Sec-independent membrane protein translocase, required for development of [[genetic competence]]<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 37: / Line 37: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[protein secretion]]}},
 {{SubtiWiki category|[[membrane proteins]]}}

@@ Line 64: / Line 64: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:'''
+* '''Protein family:''' YidC/Oxa1/Alb3 family {{PubMed|20800571,21194367,15802250}}
 * '''Paralogous protein(s):''' [[SpoIIIJ]], one of the two proteins has to be present for viability [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed]
@@ Line 133: / Line 133: @@
 =References=
 ==Reviews==
-<pubmed>22688815 </pubmed>
+<pubmed>22688815 20800571,21194367,15802250</pubmed>
 == Original publications ==
 <pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 1: / Line 1: @@
-* '''Description:''' Sec-independent membrane protein translocase<br/><br/>
+* '''Description:''' Sec-independent membrane protein translocase, required for competence development<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 12: / Line 12: @@
 |style="background:#ABCDEF;" align="center"| '''Product''' || Sec-independent membrane protein translocase
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || membrane insertion of proteins and protein secretion
+|style="background:#ABCDEF;" align="center"|'''Function''' || membrane insertion of proteins and [[protein secretion]]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 9.903