YhdI - Revision history

134.76.38.147 at 13:17, 2 April 2014

2014-04-02T13:17:51Z

Fabian Commichau: /* References */

2013-11-22T08:19:41Z

‎References

Jstuelk at 16:30, 21 November 2013

2013-11-21T16:30:20Z

Fabian Commichau: /* References */

2013-11-21T16:10:41Z

‎References

Fabian Commichau at 16:08, 21 November 2013

2013-11-21T16:08:00Z

Fabian Commichau at 16:06, 21 November 2013

2013-11-21T16:06:55Z

Fabian Commichau: /* Extended information on the protein */

2013-11-21T15:02:43Z

‎Extended information on the protein

Fabian Commichau at 14:52, 21 November 2013

2013-11-21T14:52:41Z

Fabian Commichau: /* Basic information/ Evolution */

2013-11-21T14:52:22Z

‎Basic information/ Evolution

134.76.70.252 at 12:52, 16 May 2013

2013-05-16T12:52:14Z

← Older revision		Revision as of 13:17, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' similar to transcriptional regulator ([[MocR/ GabR family]]) <br/><br/>	+	{{#bank: YhdI}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yhdI''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09480 yhdI]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 52 kDa, 6.801~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1407 bp, 469 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yhdH]]'', ''[[yhdJ]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09480 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09480 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09480 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yhdI_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdI_1026255_1027664_-1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yhdI_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09480]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU09480
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13015]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' [[MocR/ GabR family]] [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
−
−	* '''Paralogous protein(s):''' none, but there are 7 members of the [[MocR/ GabR family]] in ''B. subtilis''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:''' N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O07578 O07578]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU09480]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdI_1026255_1027664_-1 yhdI] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~<pubmed> 11756427 22020104 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 133: / Line 133: @@
 =References=
-<pubmed> 22020104 </pubmed>
+<pubmed> 11756427 22020104 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to transcriptional regulator (MocR/ GabR family) <br/><br/>
+* '''Description:''' similar to transcriptional regulator ([[MocR/ GabR family]]) <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
@@ Line 34: / Line 34: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 71: / Line 67: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:''' MocR/ GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
+* '''Protein family:''' [[MocR/ GabR family]] [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
-* '''Paralogous protein(s):''' none, but there are 7 members of the MocR/ GabR family in ''B. subtilis''
+* '''Paralogous protein(s):''' none, but there are 7 members of the [[MocR/ GabR family]] in ''B. subtilis''
 === Extended information on the protein ===

← Older revision		Revision as of 16:10, 21 November 2013
Line 136:		Line 136:

	=References=		=References=
		+
		+	<pubmed> 22020104 </pubmed>

	[[Category:Protein-coding genes]]		[[Category:Protein-coding genes]]

@@ Line 71: / Line 71: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:''' MocR/GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
+* '''Protein family:''' MocR/ GabR family [http://www.ncbi.nlm.nih.gov/sites/entrez/22020104 PubMed]
-* '''Paralogous protein(s):''' none, but there are 7 members of the MocR/GabR family in ''B. subtilis''
+* '''Paralogous protein(s):''' none, but there are 7 members of the MocR/ GabR family in ''B. subtilis''
 === Extended information on the protein ===

@@ Line 79: / Line 79: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''Domains:''' N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
 * '''Modification:'''

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdI_1026255_1027664_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yhdI_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yhdI_1026255_1027664_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yhdI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09480]]
 |-
 |}