YesJ - Revision history

134.76.38.147 at 13:09, 2 April 2014

2014-04-02T13:09:32Z

134.76.70.252 at 12:43, 16 May 2013

2013-05-16T12:43:59Z

134.76.70.252 at 09:39, 14 May 2013

2013-05-14T09:39:23Z

134.76.70.252 at 12:19, 13 May 2013

2013-05-13T12:19:12Z

Raphael2215 at 08:49, 13 August 2012

2012-08-13T08:49:41Z

134.76.70.252 at 15:46, 6 August 2012

2012-08-06T15:46:06Z

Jstuelk: /* Extended information on the protein */

2012-07-29T18:26:43Z

‎Extended information on the protein

134.76.70.252 at 15:37, 18 April 2012

2012-04-18T15:37:43Z

134.76.70.252 at 15:44, 12 April 2012

2012-04-12T15:44:29Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Lflorez

2012-01-27T20:22:09Z

Reverted edits by 134.76.70.252 (talk) to last revision by Lflorez

← Older revision		Revision as of 13:09, 2 April 2014
Line 1:		Line 1:
−	* '''Description:''' unknown <br/><br/>	+	{{#bank: YesJ}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yesJ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yeeN, yfxC, yfxD ''~~
−	\|-
−	~~\|style="background:~~#~~ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background~~:~~#ABCDEF;" align="center"\| '''Product''' \|\| unknown~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06920 yesJ]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 20 kDa, 4.867~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 540 bp, 180 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[cotJC]]'', ''[[yesK]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06920 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yesJ_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yesJ_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06920]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SpoIIID regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU06920
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/cotJABC-yesJK.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11809]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' N-acetyltransferase domain (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O31513 O31513]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU06920]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[cotJA]]-[[cotJB]]-[[cotJC]]-[[yesJ]]-[[yesK]]'' {{PubMed\|7768848}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 yesJ] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigE]] {{PubMed\|7768848,15699190}}
−
−	* '''Regulation:''' expressed during sporulation ([[SigE]], [[SpoIIID]]) {{PubMed\|7768848}}
−
−	* '''Regulatory mechanism:''' [[SpoIIID]]: transcription activation {{PubMed\|7768848}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 7768848,15699190</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 26: / Line 26: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yesJ_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yesJ_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06920]]
 |-
 |}

@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotJC]]'', ''[[yesK]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06920 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06920 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yesJ_context.gif]]

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU06920 yesJ]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06920 yesJ]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 20 kDa, 4.867
@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cotJC]]'', ''[[yesK]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12511&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06920 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yesJ_context.gif]]

@@ Line 1: / Line 1: @@
+* '''Description:''' unknown <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-

@@ Line 87: / Line 87: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===

@@ Line 99: / Line 99: @@
 * '''Operon:''' ''[[cotJA]]-[[cotJB]]-[[cotJC]]-[[yesJ]]-[[yesK]]'' {{PubMed|7768848}}
-* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|7768848,15699190}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 yesJ] {{PubMed|22383849}}
 * '''Regulation:''' expressed during sporulation ([[SigE]], [[SpoIIID]]) {{PubMed|7768848}}
@@ Line 105: / Line 107: @@
 * '''Regulatory mechanism:''' [[SpoIIID]]: transcription activation {{PubMed|7768848}}
 * '''Additional information:'''
 =Biological materials =

← Older revision		Revision as of 20:22, 27 January 2012
Line 43:		Line 43:

	* '''Locus tag:''' BSU06920		* '''Locus tag:''' BSU06920
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yesJ_757111_757653_1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===