YbbM - Revision history

Umaeder: Undo revision 90538 by Umaeder (Talk)

2009-06-11T12:25:49Z

Undo revision 90538 by Umaeder (Talk)

Umaeder: Undo revision 90746 by Umaeder (Talk)

2009-06-11T12:22:03Z

Undo revision 90746 by Umaeder (Talk)

Umaeder: /* Expression and regulation */

2009-06-11T12:05:34Z

‎Expression and regulation

Umaeder at 11:36, 11 June 2009

2009-06-11T11:36:02Z

CLammers: moved YbbM to RsiW over redirect

2009-03-23T15:45:20Z

moved YbbM to RsiW over redirect

New page

#REDIRECT [[RsiW]]

← Older revision		Revision as of 12:25, 11 June 2009
Line 1:		Line 1:
−	* '''Description:~~''' RNA polymerase ECF-type [[sigma factor]] SigW <br/><br/>~~	+	{{#bank: YbbM}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''sigW''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ybbL ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| RNA polymerase ECF-type [[sigma factor]] SigW~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| resistance against SdpC <br/>that functions in detoxification and/or <br/>production of antimicrobial compounds~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 21 kDa, 8.614~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 561 bp, 187 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[trnSL-Gln2]]'', ''[[ybbM]]''~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB11949]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:sigW_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|}
−
−	~~__TOC__~~
−
−	~~<br/><br/><br/><br/>~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU01730
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sigW-ybbM.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11573]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' ECF subfamily (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Genes controlled by SigW ===~~
−
−	~~''[[abh]]'', ''[[pbpE]]-[[racX]]'',''[[xpaC]]-[[yaaN]]'', ''[[yteI]], [[yuaG]], [[yknX\| yknXYZ]], [[ydjP]], [[yfhM]]''~~
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:''' [[RsiW]]-[[SigW]]
−
−	* '''Localization:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/Q45585 Q45585]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU01730]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
−
−	* '''Regulatory mechanism:'''
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
−	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−	~~[[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]~~
−
−	~~[[Thomas Wiegert]], University of Bayreuth, Germany [http://www.genetik.uni-bayreuth.de/LSGenetik1/Thomas%20Wiegert-Dateien/Thomas%20Wiegert.html Homepage]~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−
−	~~# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]~~

@@ Line 100: / Line 100: @@
 * '''Regulatory mechanism:'''
 ** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
 * '''Additional information:'''
 =Biological materials =

@@ Line 100: / Line 100: @@
 * '''Regulatory mechanism:'''
 ** [[AbrB]]:  transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
 * '''Additional information:'''
 =Biological materials =

← Older revision		Revision as of 11:36, 11 June 2009
Line 1:		Line 1:
−	#~~REDIRECT~~ [[RsiW]]	+	* '''Description:''' RNA polymerase ECF-type [[sigma factor]] SigW <br/><br/>
		+
		+	{\| align="right" border="1" cellpadding="2"
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Gene name'''
		+	\|''sigW''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ybbL ''
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| RNA polymerase ECF-type [[sigma factor]] SigW
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| resistance against SdpC <br/>that functions in detoxification and/or <br/>production of antimicrobial compounds
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 21 kDa, 8.614
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 561 bp, 187 aa
		+	\|-
		+	\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[trnSL-Gln2]]'', ''[[ybbM]]''
		+	\|-
		+	\|colspan="2" style="background:#FAF8CC;" align="center"\|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB11949]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
		+	\|-
		+	\|colspan="2" \| '''Genetic context''' <br/> [[Image:sigW_context.gif]]
		+	<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
		+	\|-
		+	\|}
		+
		+	__TOC__
		+
		+	<br/><br/><br/><br/>
		+
		+	=The gene=
		+
		+	=== Basic information ===
		+
		+	* '''Locus tag:''' BSU01730
		+
		+	===Phenotypes of a mutant ===
		+
		+	=== Database entries ===
		+
		+	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sigW-ybbM.html]
		+
		+	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11573]
		+
		+	=== Additional information===
		+
		+
		+	=The protein=
		+
		+	=== Basic information/ Evolution ===
		+
		+	* '''Catalyzed reaction/ biological activity:'''
		+
		+	* '''Protein family:''' ECF subfamily (according to Swiss-Prot)
		+
		+	* '''Paralogous protein(s):'''
		+
		+	=== Genes controlled by SigW ===
		+
		+	''[[abh]]'', ''[[pbpE]]-[[racX]]'',''[[xpaC]]-[[yaaN]]'', ''[[yteI]], [[yuaG]], [[yknX\| yknXYZ]], [[ydjP]], [[yfhM]]''
		+
		+	=== Extended information on the protein ===
		+
		+	* '''Kinetic information:'''
		+
		+	* '''Domains:'''
		+
		+	* '''Modification:'''
		+
		+	* '''Cofactor(s):'''
		+
		+	* '''Effectors of protein activity:'''
		+
		+	* '''Interactions:''' [[RsiW]]-[[SigW]]
		+
		+	* '''Localization:'''
		+
		+	=== Database entries ===
		+
		+	* '''Structure:'''
		+
		+	* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/Q45585 Q45585]
		+
		+	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU01730]
		+
		+	* '''E.C. number:'''
		+
		+	=== Additional information===
		+
		+	=Expression and regulation=
		+
		+	* '''Operon:'''
		+
		+	* '''[[Sigma factor]]:'''
		+
		+	* '''Regulation:'''
		+	** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
		+
		+	* '''Regulatory mechanism:'''
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
		+	** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12076816 PubMed]
		+
		+	* '''Additional information:'''
		+
		+	=Biological materials =
		+
		+	* '''Mutant:'''
		+
		+	* '''Expression vector:'''
		+
		+	* '''lacZ fusion:'''
		+
		+	* '''GFP fusion:'''
		+
		+	* '''two-hybrid system:'''
		+
		+	* '''Antibody:'''
		+
		+	=Labs working on this gene/protein=
		+	[[John Helmann]], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]
		+
		+	[[Thomas Wiegert]], University of Bayreuth, Germany [http://www.genetik.uni-bayreuth.de/LSGenetik1/Thomas%20Wiegert-Dateien/Thomas%20Wiegert.html Homepage]
		+
		+	=Your additional remarks=
		+
		+	=References=
		+
		+	# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]