YbaE - Revision history

134.76.70.252 at 10:10, 17 April 2014

2014-04-17T10:10:48Z

134.76.70.252 at 11:48, 8 April 2014

2014-04-08T11:48:21Z

134.76.38.147 at 12:50, 2 April 2014

2014-04-02T12:50:47Z

Jstuelk at 11:53, 10 January 2014

2014-01-10T11:53:52Z

Jstuelk: /* Reviews */

2013-12-27T17:25:48Z

‎Reviews

134.76.70.252 at 15:02, 11 November 2013

2013-11-11T15:02:41Z

Jstuelk at 15:05, 13 July 2013

2013-07-13T15:05:02Z

Jstuelk at 19:05, 12 July 2013

2013-07-12T19:05:34Z

Jstuelk at 19:04, 12 July 2013

2013-07-12T19:04:18Z

Jstuelk: /* References */

2013-07-12T18:40:56Z

‎References

← Older revision		Revision as of 10:10, 17 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' ATP-binding A2 component of [[ECF transporter]]s<br/><br/>~~	+	{{#bank: YbaE}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''ybaE''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''ecfA2 ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| [[ECF transporter]] (ATP-binding protein)~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| uptake of micronutrients~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01460 ybaE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YbaE YbaE]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=YbaE YbaE]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 30 kDa, 5.823~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 828 bp, 276 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[ybxA]]'', ''[[ybaF]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01460 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:ybaE_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybaE_151303_152133_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:ybaE_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01460]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[ECF transporter]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU01460
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01460&redirect=T BSU01460]
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11989]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' EcfA transporter
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** ([[YbxA]]-[[YbaE]])-[[YbaF]] {{PubMed\|10092453}}
−
−	* '''[[Localization]]:''' membrane associated (via [[YbaF]]) {{PubMed\|10092453}}
−
−	~~=== Database entries ===~~
−	* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01460&redirect=T BSU01460]
−
−	* '''Structure:'''
−	** [http://www.rcsb.org/pdb/explore/explore.do?structureId=4huq 4HUQ] (EcfA1-EcfA2-EcfT-FolT complex of ''Lactobacillus brevis''), {{PubMed\|23584589}}
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P70970 P70970]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU01460]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybaE_151303_152133_1 ybaE] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews ==~~
−	~~<pubmed>10092453, 20497229, 22574898 24362466 </pubmed>~~
−
−	~~== Original publications ==~~
−	~~<pubmed>23584589 , 21135102</pubmed>~~
−
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 17: / Line 17: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YbaE YbaE]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 5.823

@@ Line 57: / Line 57: @@
 === Database entries ===
 * '''DBTBS entry:''' no entry
@@ Line 92: / Line 93: @@
 === Database entries ===
 * '''Structure:'''

@@ Line 63: / Line 63: @@
 === Additional information===
 =The protein=
@@ Line 81: / Line 78: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 141: / Line 138: @@
 =References=
 == Reviews ==
-<pubmed>10092453, 20497229, 22574898</pubmed>
+<pubmed>10092453, 20497229, 22574898 24362466 </pubmed>
 == Original publications ==

@@ Line 141: / Line 141: @@
 =References=
 == Reviews ==
-<pubmed>10092453, 20497229, </pubmed>
+<pubmed>10092453, 20497229, 22574898</pubmed>
 == Original publications ==
 <pubmed>23584589 , 21135102</pubmed>

@@ Line 16: / Line 16: @@
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01460 ybaE]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YbaE YbaE]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YbaE YbaE]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 5.823

@@ Line 1: / Line 1: @@
-* '''Description:''' ATP-binding A2 component of ECF [[transporters]] <br/><br/>
+* '''Description:''' ATP-binding A2 component of [[ECF transporter]]s<br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 10: / Line 10: @@
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || ECF [[transporters|transporter]] (ATP-binding protein)
+|style="background:#ABCDEF;" align="center"| '''Product''' || [[ECF transporter]] (ATP-binding protein)
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of micronutrients
@@ Line 42: / Line 42: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[transporters/ other]]}},
+{{SubtiWiki category|[[ECF transporter]]}},
 {{SubtiWiki category|[[membrane proteins]]}}

← Older revision		Revision as of 19:05, 12 July 2013
Line 1:		Line 1:
−	* '''Description:''' ATP-binding A2 component of ~~ECT~~ [[transporters]] <br/><br/>	+	* '''Description:''' ATP-binding A2 component of ECF [[transporters]] <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to [[ABC transporter]] (ATP-binding protein) <br/><br/>
+* '''Description:''' ATP-binding A2 component of ECT [[transporters]] <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 6: / Line 6: @@
 |''ybaE''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ecfA2 ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || [[ABC transporter]] (ATP-binding protein)
+|style="background:#ABCDEF;" align="center"| '''Product''' || ECF [[transporters|transporter]] (ATP-binding protein)
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of micronutrients
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01460 ybaE]
@@ Line 39: / Line 39: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[ABC transporters]]}},
+{{SubtiWiki category|[[transporters/ other]]}},
 {{SubtiWiki category|[[membrane proteins]]}}
@@ Line 77: / Line 73: @@
 * '''Catalyzed reaction/ biological activity:'''
-* '''Protein family:''' [[ABC transporter]] domain (according to Swiss-Prot)
+* '''Protein family:''' EcfA transporter
 * '''Paralogous protein(s):'''
@@ Line 101: / Line 97: @@
 * '''Structure:'''
 * '''UniProt:''' [http://www.uniprot.org/uniprot/P70970 P70970]
@@ Line 116: / Line 113: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybaE_151303_152133_1 ybaE] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''

← Older revision		Revision as of 18:40, 12 July 2013
Line 143:		Line 143:

	=References=		=References=
		+	== Reviews ==
		+	<pubmed>10092453, 20497229, </pubmed>
		+	== Original publications ==
		+	<pubmed>23584589 , 21135102</pubmed>

−	~~<pubmed>10092453,, </pubmed>~~

	[[Category:Protein-coding genes]]		[[Category:Protein-coding genes]]