YaaH - Revision history

134.76.38.147 at 12:45, 2 April 2014

2014-04-02T12:45:10Z

Jstuelk at 18:31, 4 January 2014

2014-01-04T18:31:40Z

Jstuelk: /* Extended information on the protein */

2013-12-27T15:07:56Z

‎Extended information on the protein

Jstuelk at 15:04, 27 December 2013

2013-12-27T15:04:35Z

Jstuelk: /* Extended information on the protein */

2013-08-13T14:57:50Z

‎Extended information on the protein

Jstuelk at 14:51, 13 August 2013

2013-08-13T14:51:32Z

134.76.70.252 at 12:17, 16 May 2013

2013-05-16T12:17:07Z

134.76.70.252 at 09:07, 14 May 2013

2013-05-14T09:07:06Z

134.76.70.252 at 11:53, 13 May 2013

2013-05-13T11:53:13Z

Jstuelk at 15:13, 2 April 2013

2013-04-02T15:13:14Z

← Older revision		Revision as of 12:45, 2 April 2014
Line 1:		Line 1:
−	* '''Description:~~''' general stress protein, survival of ethanol stress, [[SafA]]-dependent protein of the inner spore coat, spore cortex lytic protein <br/><br/>~~	+	{{#bank: YaaH}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''yaaH''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' sleL''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| N-acetylglucosaminidase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| survival of ethanol stress, protection of the spore~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00160 yaaH]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 48 kDa, 5.618~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1281 bp, 427 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[dgk]]'', ''[[yaaI]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00160 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yaaH_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaH_23868_25151_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yaaH_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00160]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}},~~
−	~~{{SubtiWiki category\|[[general stress proteins (controlled by SigB)]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[SigB regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SpoIIID regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU00160
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaH.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10080]
−
−	~~=== Additional information===~~
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−	** contains two N-acetylglucosamine-polymer-binding [[LysM domain]]s at the N-terminus {{PubMed\|18430080}}
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−	** inner spore coat, localization depends on [[SafA]] {{PubMed\|19933362,22171814}}
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P37531 P37531]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00160]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~required for survival of ethanol stress [http://www.ncbi.nlm.nih.gov/sites/entrez/15805528 PubMed]~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''yaaH'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10419957 PubMed]
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaH_23868_25151_-1 yaaH] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:''' [[SigE]] {{PubMed\|15699190,10419957}}, [[SigB]] {{PubMed\|15805528}}
−
−	* '''Regulation:'''
−	** induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed]
−	** expressed during sporulation in the mother cell ([[SigE]], [[SpoIIID]]) {{PubMed\|15383836,10419957}}
−
−	* '''Regulatory mechanism:'''
−	** [[SpoIIID]]: transcription repression {{PubMed\|15383836}}
−
−	* '''Additional information:''' the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~== Reviews==~~
−	~~<pubmed>18430080 23202530</pubmed>~~
−	~~== Original publications ==~~
−	~~<pubmed>19087206,12884008,10419957,15805528 11964120, 19933362 22171814 15383836 22343356 18835992 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 142: / Line 142: @@
 =References=
 == Reviews==
-<pubmed>18430080</pubmed>
+<pubmed>18430080 23202530</pubmed>
 == Original publications ==
 <pubmed>19087206,12884008,10419957,15805528 11964120, 19933362 22171814 15383836 22343356 18835992 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 78: / Line 78: @@
 * '''[[Domains]]:'''
-** contains a N-acetylglucosamine-polymer-binding [[LysM domain]] {{PubMed|18430080}}
+** contains two N-acetylglucosamine-polymer-binding [[LysM domain]]s at the N-terminus {{PubMed|18430080}}
 * '''Modification:'''

@@ Line 77: / Line 77: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 140: / Line 141: @@
 =References=
+== Reviews==
 <pubmed>19087206,12884008,10419957,15805528 11964120, 19933362 22171814 15383836 22343356 18835992 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 88: / Line 88: @@
 * '''[[Localization]]:'''
-** inner spore coat  {{PubMed|19933362,22171814}}
+** inner spore coat, localization depends on [[SafA]] {{PubMed|19933362,22171814}}
 === Database entries ===

← Older revision		Revision as of 14:51, 13 August 2013
Line 1:		Line 1:
−	* '''Description:''' general stress protein, survival of ethanol stress, [[SafA]]-dependent spore coat ~~protein~~, spore cortex lytic protein <br/><br/>	+	* '''Description:''' general stress protein, survival of ethanol stress, [[SafA]]-dependent protein of the inner spore coat, spore cortex lytic protein <br/><br/>

	{\| align="right" border="1" cellpadding="2"		{\| align="right" border="1" cellpadding="2"

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaH_23868_25151_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yaaH_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaH_23868_25151_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yaaH_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00160]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dgk]]'', ''[[yaaI]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00160 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00160 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yaaH_context.gif]]

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol  stress, protection of the spore
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU00160 yaaH]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00160 yaaH]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.618
@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dgk]]'', ''[[yaaI]]''
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB11792&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00160 Advanced_DNA]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yaaH_context.gif]]

@@ Line 1: / Line 1: @@
-* '''Description:''' general stress protein, survival of ethanol  stress, [[SafA]]-dependent spore coat protein <br/><br/>
+* '''Description:''' general stress protein, survival of ethanol  stress, [[SafA]]-dependent spore coat protein, spore cortex lytic protein <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 6: / Line 6: @@
 |''yaaH''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' sleL''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat protein
+|style="background:#ABCDEF;" align="center"| '''Product''' || N-acetylglucosaminidase
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol  stress, protection of the spore
@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 114: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaH_23868_25151_-1 yaaH] {{PubMed|22383849}}
-* '''Sigma factor:''' [[SigE]] {{PubMed|15699190,10419957}}, [[SigB]] {{PubMed|15805528}}
+* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,10419957}}, [[SigB]] {{PubMed|15805528}}
 * '''Regulation:'''
@@ Line 145: / Line 141: @@
 =References=
-<pubmed>19087206,12884008,10419957,15805528 11964120, 19933362 22171814 15383836 </pubmed>
+<pubmed>19087206,12884008,10419957,15805528 11964120, 19933362 22171814 15383836 22343356 18835992 </pubmed>
 [[Category:Protein-coding genes]]