SnaB - Revision history

Jstuelk at 12:04, 18 August 2013

2013-08-18T12:04:46Z

Jstuelk: /* Expression and regulation */

2013-08-18T11:49:10Z

‎Expression and regulation

Jstuelk: /* Expression and regulation */

2013-08-18T11:48:10Z

‎Expression and regulation

Jstuelk: /* Basic information/ Evolution */

2013-08-18T11:20:08Z

‎Basic information/ Evolution

Jstuelk: /* Categories containing this gene/protein */

2013-08-18T11:14:48Z

‎Categories containing this gene/protein

Jstuelk at 11:10, 18 August 2013

2013-08-18T11:10:58Z

Jstuelk: Jstuelk moved page YxeL to SnaB: 23944997

2013-08-18T11:08:11Z

Jstuelk moved page YxeL to SnaB: 23944997

Jstuelk: /* References */

2013-07-13T16:40:40Z

‎References

134.76.70.252 at 14:58, 16 May 2013

2013-05-16T14:58:39Z

134.76.70.252 at 11:41, 14 May 2013

2013-05-14T11:41:02Z

← Older revision		Revision as of 12:04, 18 August 2013
Line 1:		Line 1:
−	* '''Description:~~''' sulphur N-acetylase, may be involved in the utilization of modified amino acids<br/><br/>~~	+	{{#bank: SnaB}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''snaB''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| '' yxeL''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| sulphur N-acetylase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| unknown~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39510 snaB]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 18 kDa, 9.125~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 495 bp, 165 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[yxeM]]'', ''[[yxeK]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39510 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39510 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39510 DNA_with_flanks]
−	\|-
−	\|-
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yxeL_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yxeL_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39510]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CymR regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU39510
−
−	~~===Phenotypes of a mutant ===~~
−	* the ''[[snaA]] [[snaB]]'' double mutant does not grow with S-methyl cysteine {{PubMed\|23944997}}
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxeKLMNOPQ.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11888]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:''' acetyltransferase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[SnaA]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P54951 P54951]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39510]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−	* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed\|10746760}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 snaB] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigA]] {{PubMed\|16513748}}
−
−	* '''Regulation:'''
−	** repressed in the presence of cysteine ([[CymR]]) {{PubMed\|16513748}}
−
−	* '''Regulatory mechanism:'''
−	** [[CymR]]: transcription repression {{PubMed\|16513748}}
−
−	* '''Additional information:'''
−	** the amount of the mRNA is substantially decreased upon depletion of [[Rny\|RNase Y]] {{PubMed\|21815947}}
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>10746760,15937167,16513748, 21815947 23944997</pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 106: / Line 106: @@
 * '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed|10746760}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 yxeL] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 snaB] {{PubMed|22383849}}
 * '''Sigma factor:''' [[SigA]] {{PubMed|16513748}}

@@ Line 104: / Line 104: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yxeK]]-[[yxeL]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[yxeP]]-[[yxeQ]]'' {{PubMed|10746760}}
+* '''Operon:''' ''[[yxeK]]-[[snaB]]-[[yxeM]]-[[yxeN]]-[[yxeO]]-[[sndB]]-[[yxeQ]]'' {{PubMed|10746760}}
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 yxeL] {{PubMed|22383849}}

@@ Line 73: / Line 73: @@
 * '''Protein family:''' acetyltransferase family (according to Swiss-Prot)
-* '''Paralogous protein(s):'''
+* '''Paralogous protein(s):''' [[SnaA]]
 === Extended information on the protein ===

@@ Line 40: / Line 40: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
 = This gene is a member of the following [[regulons]] =

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' sulphur N-acetylase, may be involved in the utilization of modified amino acids<br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yxeL''
+|''snaB''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' yxeL''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || sulphur N-acetylase
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39510 yxeL]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39510 snaB]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 18 kDa, 9.125
@@ Line 37: / Line 37: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 56: / Line 52: @@
 ===Phenotypes of a mutant ===
 === Database entries ===
@@ Line 141: / Line 138: @@
 =References=
-<pubmed>10746760,15937167,16513748, 21815947</pubmed>
+<pubmed>10746760,15937167,16513748, 21815947 23944997</pubmed>
 [[Category:Protein-coding genes]]

← Older revision	Revision as of 11:08, 18 August 2013
(No difference)

@@ Line 29: / Line 29: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeL_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yxeL_4060307_4060804_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yxeL_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39510]]
 |-
 |}

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxeM]]'', ''[[yxeK]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39510 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39510 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39510 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39510 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39510 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39510 DNA_with_flanks]
 |-
 |-