OpcR - Revision history

Jstuelk at 08:58, 21 August 2013

2013-08-21T08:58:13Z

Jstuelk: /* Basic information/ Evolution */

2013-08-21T08:57:55Z

‎Basic information/ Evolution

Jstuelk: /* Categories containing this gene/protein */

2013-08-21T08:44:23Z

‎Categories containing this gene/protein

Jstuelk at 08:40, 21 August 2013

2013-08-21T08:40:13Z

Jstuelk: Jstuelk moved page YvbF to OpcR: 23960087

2013-08-21T08:28:34Z

Jstuelk moved page YvbF to OpcR: 23960087

134.76.70.252 at 14:35, 16 May 2013

2013-05-16T14:35:45Z

134.76.70.252 at 11:17, 14 May 2013

2013-05-14T11:17:32Z

134.76.70.252 at 13:52, 13 May 2013

2013-05-13T13:52:11Z

134.76.70.252 at 16:01, 7 August 2012

2012-08-07T16:01:34Z

134.76.70.252 at 09:20, 23 April 2012

2012-04-23T09:20:42Z

← Older revision		Revision as of 08:58, 21 August 2013
Line 1:		Line 1:
−	* '''Description:~~''' transcriptional repressor of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons<br/><br/>~~	+	{{#bank: OpcR}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''opcR''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yvbF ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| choline-responsible transcription repressor~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| regulation of choline uptake~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33840 opcR]
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 21 kDa, 5.837~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 555 bp, 185 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[opuCA]]'', ''[[yvbG]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33840 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yvbF_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:yvbF_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33840]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transcription factors and their control]]}},~~
−	~~{{SubtiWiki category\|[[coping with hyper-osmotic stress]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−	~~= The [[OpcR regulon]] =~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU33840
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14079]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−	** transcriptional repression of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons {{PubMed\|23960087}}
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):''' [[YvaV]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''Interactions:'''
−
−	* '''Localization:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O34709 O34709]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33840]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:'''
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 opcR] {{PubMed\|22383849}}
−
−	* '''Sigma factor:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed> 23960087 </pubmed>~~
−	~~[[Category:Protein-coding genes]]~~

@@ Line 69: / Line 69: @@
 * '''Catalyzed reaction/ biological activity:'''
-** transcriptional repression of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons in the presence of choline {{PubMed|23960087}}
+** transcriptional repression of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons {{PubMed|23960087}}
 * '''Protein family:'''

@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
 {{SubtiWiki category|[[transcription factors and their control]]}},
 {{SubtiWiki category|[[coping with hyper-osmotic stress]]}}

@@ Line 1: / Line 1: @@
-* '''Description:''' unknown <br/><br/>
+* '''Description:''' transcriptional repressor of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons<br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yvbF''
+|''opcR''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvbF ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || choline-responsible transcription repressor
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of choline uptake
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33840 yvbF]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33840 opcR]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 5.837
@@ Line 35: / Line 35: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[proteins of unknown function]]}}
+{{SubtiWiki category|[[miscellaneous metabolic pathways]]}},
 = This gene is a member of the following [[regulons]] =
 =The gene=
@@ Line 71: / Line 70: @@
 * '''Catalyzed reaction/ biological activity:'''
+** transcriptional repression of the ''[[opuBA]]-[[opuBB]]-[[opuBC]]-[[opuBD]]'' and ''[[opuCA]]-[[opuCB]]-[[opuCC]]-[[opuCD]]'' operons in the presence of choline {{PubMed|23960087}}
 * '''Protein family:'''
-* '''Paralogous protein(s):'''
+* '''Paralogous protein(s):''' [[YvaV]]
 === Extended information on the protein ===
@@ Line 108: / Line 107: @@
 * '''Operon:'''
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 yvbF] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 opcR] {{PubMed|22383849}}
 * '''Sigma factor:'''
@@ Line 137: / Line 136: @@
 =References=
+<pubmed> 23960087 </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 27: / Line 27: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvbF_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvbF_3471266_3471823_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvbF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33840]]
 |-
 |}

← Older revision	Revision as of 08:28, 21 August 2013
(No difference)

@@ Line 22: / Line 22: @@
 |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[opuCA]]'', ''[[yvbG]]''
 |-
-|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33840 Advanced_DNA]
+|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33840 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33840 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33840 DNA_with_flanks]
 |-
 |colspan="2" | '''Genetic context''' <br/> [[Image:yvbF_context.gif]]