MmgD - Revision history

134.76.70.252 at 11:10, 7 January 2014

2014-01-07T11:10:22Z

134.76.70.252 at 13:51, 16 May 2013

2013-05-16T13:51:56Z

134.76.70.252 at 13:14, 13 May 2013

2013-05-13T13:14:57Z

134.76.70.252 at 11:28, 7 August 2012

2012-08-07T11:28:26Z

134.76.70.252 at 08:02, 20 April 2012

2012-04-20T08:02:41Z

134.76.70.252 at 10:52, 16 April 2012

2012-04-16T10:52:24Z

Jstuelk: Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

2012-01-26T12:30:26Z

Reverted edits by 134.76.70.252 (talk) to last revision by Jstuelk

134.76.70.252 at 13:16, 25 January 2012

2012-01-25T13:16:12Z

Jstuelk at 09:20, 16 October 2011

2011-10-16T09:20:14Z

Lflorez at 21:11, 8 December 2010

2010-12-08T21:11:56Z

← Older revision		Revision as of 11:10, 7 January 2014
Line 1:		Line 1:
−	* '''Description:~~''' 2-methylcitrate synthase <br/><br/>~~	+	{{#bank: MmgD}}

−	~~{\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''mmgD''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yqiO, prpC ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| 2-methylcitrate synthase~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| mother cell metabolism~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24140 mmgD]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 41 kDa, 6.202~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 1116 bp, 372 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[mmgE]]'', ''[[mmgC]]''~~
−	\|-
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/mmgD_nucleotide.txt Gene sequence (+200bp) ]'''~~
−	~~\|style="background:#FAF8CC;" align="center"\|'''[http://subtiwiki.uni-goettingen.de/mmgD_protein.txt Protein sequence]'''~~
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:mmgD_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 Expression at a glance]'''   {{PubMed\|22383849}}<br/>[[Image:mmgD_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24140]]
−	\|-
−	\|}
−
−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−
−
−	~~<br/><br/><br/><br/><br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[sporulation proteins]]}},~~
−	~~{{SubtiWiki category\|[[poorly characterized/ putative enzymes]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−	~~{{SubtiWiki regulon\|[[CcpA regulon]]}},~~
−	~~{{SubtiWiki regulon\|[[SigE regulon]]}}~~
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU24140
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/mmgABCDE-yqiQ.html]
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11322]
−
−	~~=== Additional information===~~
−
−
−
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:''' Propanoyl-CoA + H<sub>2</sub>O + oxaloacetate = (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate + CoA (according to Swiss-Prot)
−
−	* '''Protein family:''' citrate synthase family (according to Swiss-Prot)
−
−	* '''Paralogous protein(s):''' [[CitA]], [[CitZ]]
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''Domains:'''
−
−	* '''Modification:'''
−
−	* '''Cofactor(s):'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−
−	* '''[[Localization]]:'''
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/P45858 P45858]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU24140]
−
−	* '''E.C. number:''' [http://www.expasy.org/enzyme/2.3.3.5 2.3.3.5]
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[mmgA]]-[[mmgB]]-[[mmgC]]-[[mmgD]]-[[mmgE]]-[[yqiQ]]'' {{PubMed\|8759838}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 mmgD] {{PubMed\|22383849}}
−
−	* '''Sigma factor:''' [[SigE]] {{PubMed\|15699190,8759838}}
−
−	* '''Regulation:'''
−	** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed\|15699190,8759838}}
−	** repressed by glucose ([[CcpA]]) {{PubMed\|8759838}}
−	** expression is reduced in a [[SigV]] mutant {{PubMed\|21926231}}
−
−	* '''Regulatory mechanism:'''
−	**[[CcpA]]: transcription repression {{PubMed\|8759838}}
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~'''Additional publications:''' {{PubMed\|21926231}}~~
−	~~<pubmed>8759838,15699190, </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 30: / Line 30: @@
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
-|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:mmgD_expression.png|500px]]
+|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:mmgD_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24140]]
 |-
 |}

@@ Line 14: / Line 14: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || mother cell metabolism
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU24140 mmgD]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24140 mmgD]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''

@@ Line 13: / Line 13: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Function''' || mother cell metabolism
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''

@@ Line 27: / Line 27: @@
 |colspan="2" | '''Genetic context''' <br/> [[Image:mmgD_context.gif]]
   <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 |-
 |}
 __TOC__
 <br/><br/><br/><br/><br/><br/>

@@ Line 103: / Line 103: @@
 * '''Operon:''' ''[[mmgA]]-[[mmgB]]-[[mmgC]]-[[mmgD]]-[[mmgE]]-[[yqiQ]]'' {{PubMed|8759838}}
-* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,8759838}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 mmgD] {{PubMed|22383849}}
 * '''Regulation:'''

← Older revision		Revision as of 12:30, 26 January 2012
Line 47:		Line 47:

	* '''Locus tag:''' BSU24140		* '''Locus tag:''' BSU24140
−
−	~~[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 Expression]~~

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

← Older revision		Revision as of 13:16, 25 January 2012
Line 47:		Line 47:

	* '''Locus tag:''' BSU24140		* '''Locus tag:''' BSU24140
		+
		+	[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=prpC_2509654_2510772_-1 Expression]

	===Phenotypes of a mutant ===		===Phenotypes of a mutant ===

@@ Line 83: / Line 83: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:'''
+* '''[[SubtInteract|Interactions]]:'''
-* '''Localization:'''
+* '''[[Localization]]:'''
 === Database entries ===
@@ Line 108: / Line 108: @@
 ** expressed early during sporulation in the mother cell ([[SigE]]) {{PubMed|15699190,8759838}}
 ** repressed by glucose ([[CcpA]]) {{PubMed|8759838}}
 * '''Regulatory mechanism:'''
@@ Line 133: / Line 134: @@
 =References=
+'''Additional publications:''' {{PubMed|21926231}}
 <pubmed>8759838,15699190, </pubmed>
 [[Category:Protein-coding genes]]

@@ Line 33: / Line 33: @@
 <br/><br/><br/><br/><br/><br/>
 =The gene=
@@ Line 52: / Line 60: @@
-= Categories containing this gene/protein =
 =The protein=