KhtT - Revision history

Jstuelk: /* Biological materials */

2015-07-20T08:30:08Z

‎Biological materials

134.76.70.252 at 11:38, 8 April 2014

2014-04-08T11:38:58Z

Jstuelk at 17:15, 14 February 2014

2014-02-14T17:15:48Z

Jstuelk at 17:13, 14 February 2014

2014-02-14T17:13:15Z

Jstuelk: Jstuelk moved page YhaT to KhtT: 24330391

2014-02-14T17:11:21Z

Jstuelk moved page YhaT to KhtT: 24330391

Jstuelk at 18:12, 7 January 2014

2014-01-07T18:12:12Z

Jstuelk: /* Extended information on the protein */

2013-12-04T18:09:27Z

‎Extended information on the protein

Jstuelk: /* Expression and regulation */

2013-12-04T18:08:46Z

‎Expression and regulation

Jstuelk: /* Expression and regulation */

2013-12-04T18:07:38Z

‎Expression and regulation

Jstuelk at 17:36, 4 December 2013

2013-12-04T17:36:41Z

← Older revision		Revision as of 08:30, 20 July 2015
Line 1:		Line 1:
−	* '''Description:''' K+/H+ antiporter for K+ efflux<br/><br/>	+	{{#bank: KhtT}}
−	{~~\| align="right" border="1" cellpadding="2"~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Gene name'''~~
−	~~\|''khtT''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Synonyms''' \|\| ''yhaT ''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Essential''' \|\| no~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Product''' \|\| K+/H+ antiporter for K+ efflux~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Function''' \|\| potassium ion efflux~~
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09860 khtT]
−	\|-
−	\|colspan="2" style="background:#FAF8CC;" align="center"\| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhaT KhtT]
−	\|-
−	~~\|colspan="2" style="background:~~#~~FAF8CC;" align="center"\| '''Metabolic function and regulation of this protein in [[SubtiPathways\|''Subti''Pathways]]: <br/>[http~~:~~//subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=~~KhtT ~~KhtT]'''~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''MW, pI''' \|\| 18 kDa, 4.892~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\| '''Gene length, protein length''' \|\| 495 bp, 165 aa~~
−	\|-
−	~~\|style="background:#ABCDEF;" align="center"\|'''Immediate neighbours''' \|\| ''[[khtU]]'', ''[[khtS]]''~~
−	\|-
−	\|style="background:#FAF8CC;" align="center"\|'''Sequences'''\|\|[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09860 DNA_with_flanks]
−	\|-
−	~~\|colspan="2" \| '''Genetic context''' <br/> [[Image:yhaT_context.gif]]~~
−	~~<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>~~
−	\|-
−	~~\|colspan="2" \|'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=khtT_1060427_1060924_-1 Expression at a glance]'''   {{PubMed\|22383849}~~}~~<br/>[[Image:yhaT_expression.png\|500px\|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09860]]~~
−	\|-
−	\|}

−	~~__TOC__~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/><br/><br/>~~
−	~~<br/><br/>~~
−
−	~~= [[Categories]] containing this gene/protein =~~
−	~~{{SubtiWiki category\|[[transporters/ other]]}},~~
−	~~{{SubtiWiki category\|[[metal ion homeostasis (K, Na, Ca, Mg)]]}},~~
−	~~{{SubtiWiki category\|[[membrane proteins]]}}~~
−
−	~~= This gene is a member of the following [[regulons]] =~~
−
−
−	~~=The gene=~~
−
−	~~=== Basic information ===~~
−
−	* '''Locus tag:''' BSU09860
−
−	~~===Phenotypes of a mutant ===~~
−
−	~~=== Database entries ===~~
−
−	* '''DBTBS entry:''' no entry
−
−	* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12996]
−
−	~~=== Additional information===~~
−
−	~~=The protein=~~
−
−	~~=== Basic information/ Evolution ===~~
−
−	* '''Catalyzed reaction/ biological activity:'''
−
−	* '''Protein family:'''
−
−	* '''Paralogous protein(s):'''
−
−	~~=== Extended information on the protein ===~~
−
−	* '''Kinetic information:'''
−
−	* '''[[Domains]]:'''
−	** contains a [[RCK_C domain]] at the C-terminus (according to UniProt, [http://www.uniprot.org/uniprot/?query=domain:%22RCK+C-terminal+domain*%22])
−
−	* '''Modification:'''
−
−	* '''[[Cofactors]]:'''
−
−	* '''Effectors of protein activity:'''
−
−	* '''[[SubtInteract\|Interactions]]:'''
−	** [[KhtT]]-[[KhtU]] {{PubMed\|17679694}}
−
−	* '''[[Localization]]:'''
−	** cell membrane (according to Swiss-Prot)
−
−	~~=== Database entries ===~~
−
−	* '''Structure:'''
−
−	* '''UniProt:''' [http://www.uniprot.org/uniprot/O07535 O07535]
−
−	* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU09860]
−
−	* '''E.C. number:'''
−
−	~~=== Additional information===~~
−
−	~~=Expression and regulation=~~
−
−	* '''Operon:''' ''[[khtS]]-[[khtT]]-[[khtU]]'' {{PubMed\|22383849}}
−
−	* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=khtT_1060427_1060924_-1 khtT] {{PubMed\|22383849}}
−
−	* '''[[Sigma factor]]:'''
−
−	* '''Regulation:'''
−
−	* '''Regulatory mechanism:'''
−
−	* '''Additional information:'''
−
−	~~=Biological materials =~~
−
−	* '''Mutant:'''
−
−	* '''Expression vector:'''
−
−	* '''lacZ fusion:'''
−
−	* '''GFP fusion:'''
−
−	* '''two-hybrid system:'''
−
−	* '''Antibody:'''
−
−	~~=Labs working on this gene/protein=~~
−
−	~~=Your additional remarks=~~
−
−	~~=References=~~
−	~~<pubmed>14987767 ,17679694 24330391 </pubmed>~~
−
−	~~[[Category:Protein-coding genes]]~~

@@ Line 16: / Line 16: @@
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhaT KhtT]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 18 kDa, 4.892

@@ Line 3: / Line 3: @@
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yhaT''
+|''khtT''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yhaT ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no

@@ Line 13: / Line 13: @@
 |style="background:#ABCDEF;" align="center"|'''Function''' || potassium ion efflux
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09860 yhaT]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU09860 khtT]
 |-
-|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhaT YhaT]
+|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=YhaT KhtT]
 |-
 |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 18 kDa, 4.892
@@ Line 21: / Line 21: @@
 |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 495 bp, 165 aa
 |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yhaU]]'', ''[[yhaS]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[khtU]]'', ''[[khtS]]''
 |-
 |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU09860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU09860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU09860 DNA_with_flanks]
@@ Line 86: / Line 86: @@
 * '''[[SubtInteract|Interactions]]:'''
-** [[YhaT]]-[[YhaU]] {{PubMed|17679694}}
+** [[KhtT]]-[[KhtU]] {{PubMed|17679694}}
 * '''[[Localization]]:'''
@@ Line 105: / Line 105: @@
 =Expression and regulation=
-* '''Operon:''' ''[[yhaS]]-[[yhaT]]-[[yhaU]]'' {{PubMed|22383849}}
+* '''Operon:''' ''[[khtS]]-[[khtT]]-[[khtU]]'' {{PubMed|22383849}}
-* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=khtT_1060427_1060924_-1 yhaT] {{PubMed|22383849}}
+* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=khtT_1060427_1060924_-1 khtT] {{PubMed|22383849}}
 * '''[[Sigma factor]]:'''

@@ Line 61: / Line 61: @@
 === Additional information===
 =The protein=
@@ Line 137: / Line 136: @@
 =References=
-<pubmed>14987767 ,17679694  </pubmed>
+<pubmed>14987767 ,17679694 24330391 </pubmed>
 [[Category:Protein-coding genes]]

← Older revision	Revision as of 17:11, 14 February 2014
(No difference)

@@ Line 77: / Line 77: @@
 * '''Kinetic information:'''
-* '''Domains:'''
+* '''[[Domains]]:'''
 ** contains a [[RCK_C domain]] at the C-terminus (according to UniProt, [http://www.uniprot.org/uniprot/?query=domain:%22RCK+C-terminal+domain*%22])

@@ Line 36: / Line 36: @@
 <br/><br/><br/><br/>
 <br/><br/><br/><br/>
 <br/><br/>
@@ Line 65: / Line 61: @@
 === Additional information===
@@ Line 84: / Line 78: @@
 * '''Domains:'''
 * '''Modification:'''
-* '''Cofactor(s):'''
+* '''[[Cofactors]]:'''
 * '''Effectors of protein activity:'''
@@ Line 115: / Line 110: @@
 * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=khtT_1060427_1060924_-1 yhaT] {{PubMed|22383849}}
-* '''Sigma factor:'''
+* '''[[Sigma factor]]:'''
 * '''Regulation:'''