SasA

2010-11-29T17:29:00Z

Kriel: /* References */

* '''Description:''' (p)ppGpp synthetase, small alarmone synthetase <br/><br/>

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ywaC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ipa-7d ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || (p)ppGpp synthetase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || ppGpp synthesis independent from stringent response
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 6.217
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 630 bp, 210 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywaD]]'', ''[[menA]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB15874]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ywaC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}

__TOC__

<br/><br/>

=The gene=

=== Basic information ===

* '''Locus tag:''' BSU38480

===Phenotypes of a mutant ===

=== Database entries ===

* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ywaC.html]

* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10553]

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:'''

* '''Protein family:'''

* '''Paralogous protein(s):''' [[YjbM]]

=== Extended information on the protein ===

* '''Kinetic information:'''

* '''Domains:'''

* '''Modification:'''

* '''Cofactor(s):'''

* '''Effectors of protein activity:'''

* '''Interactions:'''

* '''Localization:'''

=== Database entries ===

* '''Structure:'''

* '''UniProt:''' [http://www.uniprot.org/uniprot/P39583 P39583]

* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU38480]

* '''E.C. number:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''ywaC'' {{PubMed|11866510}}

* '''[[Sigma factor]]:''' [[SigW]] {{PubMed|11866510}}

* '''Regulation:''' Transcription is highly upregulated in response to lesions in late-acting teichoic acid synthesis genes ''[[tagB]]'', ''[[tagD]]'' and ''[[tagF]]'', and also in response to cell-wall-active compounds like bacitracin or vancomycin {{PubMed|19477419}}

* '''Regulatory mechanism:'''

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

* '''GFP fusion:'''

* '''two-hybrid system:'''

* '''Antibody:'''

=Labs working on this gene/protein=

=Your additional remarks=

=References=

<pubmed> 18670626 19447912 18067544 19477419 12207695 11866510 </pubmed>

[[Category:Protein-coding genes]]

SasB

2010-11-29T17:27:35Z

Kriel: /* References */

* '''Description:''' (p)ppGpp synthetase <br/><br/>

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yjbM''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || (p)ppGpp synthetase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || ppGpp synthesis independent from stringent response
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 6.708
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 633 bp, 211 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yjbL]]'', ''[[nadF]]''
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[EMBLCDS:CAB13017]+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yjbM_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|}

__TOC__

<br/><br/>

=The gene=

=== Basic information ===

* '''Locus tag:''' BSU11600

===Phenotypes of a mutant ===

=== Database entries ===

* '''DBTBS entry:''' no entry

* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13142]

=== Additional information===

=The protein=

=== Basic information/ Evolution ===

* '''Catalyzed reaction/ biological activity:'''

* '''Protein family:'''

* '''Paralogous protein(s):''' [[YwaC]]

=== Extended information on the protein ===

* '''Kinetic information:'''

* '''Domains:'''

* '''Modification:'''

* '''Cofactor(s):'''

* '''Effectors of protein activity:'''

* '''Interactions:'''

* '''Localization:'''

=== Database entries ===

* '''Structure:'''

* '''UniProt:''' [http://www.uniprot.org/uniprot/O31611 O31611]

* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU11600]

* '''E.C. number:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''[[yjbL]]-[[yjbM]]-[[nadF]]-[[yjbO]]'' {{PubMed|18067544}}

* '''[[Sigma factor]]:'''

* '''Regulation:''' expressed during exponential growth

* '''Regulatory mechanism:'''

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

* '''GFP fusion:'''

* '''two-hybrid system:'''

* '''Antibody:'''

=Labs working on this gene/protein=

=Your additional remarks=

=References=

<pubmed> 18670626 19447912 18067544 </pubmed>

[[Category:Protein-coding genes]]

SubtiWiki - User contributions [en]

SasA

SasB