http://subtiwiki-test.uni-goettingen.de/wiki//api.php?action=feedcontributions&feedformat=atom&user=Cbloetz 2026-04-20T15:27:11Z User contributions MediaWiki 1.30.0 http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Antibodies&diff=209423 2016-11-02T13:10:02Z

<p>Cbloetz: /* Antibodies for Bacillus subtilis */</p> <hr /> <div>Here you can find a list of available antibodies:<br /> <br /> ==General Antibodies==<br /> *anti-FLAG: Supplier: Sigma-Aldrich. Dilution: 1:10.000<br /> *anti-GFP: Supplier: MBL, Medical &amp; Biological Laboratories. Dilution: 1:10.000<br /> *anti-Strep: Supplier: IBA, Göttingen. Dilution: 1:1.000<br /> *anti-rabbit-IgG-AP secondary antibody: Supplier: Promega. Dilution: 1:100.000<br /> <br /> ==Antibodies for ''Bacillus subtilis''==<br /> * anti-[[CggR]]: Generation: By a poor rabbit @ the SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[DarA]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[GapA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[GltC]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed] <br /> * anti-[[RocG]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:15.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed]<br /> * anti-[[ClpC]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpE]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpP]]: from [[Ulf Gerth]], Dilution: 1:100.000<br /> * anti-[[NrgB]]: Generation: SeqLab Sequencing Laboratories. {{PubMed|14600241}}<br /> * anti-[[Rny]]: from [[Jan Maarten van Dijl]], dilution 1:100.000<br /> * anti-[[Eno]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[AccA]]: from [[xxx]], dilution 1:10.000 Reference: unpublished<br /> * anti-[[AccB]]: from [[xxx]], dilution 1:10.000 Reference: unpublished<br /> * anti-[[AccC]]: from [[xxx]], dilution 1:10.000 Reference: unpublished<br /> * anti-[[AccD]]: from [[xxx]], dilution 1:10.000 Reference: unpublished<br /> <br /> ==Antibodies for ''Listeria monocytogenes''==<br /> *anti-[[CdaA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:5.000. Reference: unpublished<br /> *anti-[[PrfA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:10.000. Reference: unpublished<br /> <br /> ==Antibodies for ''Mycoplasma pneumoniae''==<br /> *anti-[[GlpD]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X0.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed] <br /> *anti-[[GlpK]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed]</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Antibodies&diff=208746 2015-08-20T11:11:19Z

<p>Cbloetz: /* Antibodies for Bacillus subtilis */</p> <hr /> <div>Here you can find a list of available antibodies:<br /> <br /> ==General Antibodies==<br /> *anti-FLAG: Supplier: Sigma-Aldrich. Dilution: 1:10.000<br /> *anti-GFP: Supplier: MBL, Medical &amp; Biological Laboratories. Dilution: 1:10.000<br /> *anti-Strep: Supplier: IBA, Göttingen. Dilution: 1:1.000<br /> *anti-rabbit-IgG-AP secondary antibody: Supplier: Promega. Dilution: 1:100.000<br /> <br /> ==Antibodies for ''Bacillus subtilis''==<br /> * anti-[[CggR]]: Generation: By a poor rabbit @ the SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[DarA]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[GapA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[GltC]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed] <br /> * anti-[[RocG]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:15.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed]<br /> * anti-[[ClpC]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpE]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpP]]: from [[Ulf Gerth]], Dilution: 1:100.000<br /> * anti-[[NrgB]]: Generation: SeqLab Sequencing Laboratories. {{PubMed|14600241}}<br /> * anti-[[Rny]]: from [[Jan Maarten van Dijl]], dilution 1:100.000<br /> * anti-[[Eno]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[AccA]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccB]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccC]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccD]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> <br /> ==Antibodies for ''Listeria monocytogenes''==<br /> *anti-[[CdaA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:5.000. Reference: unpublished<br /> *anti-[[PrfA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:10.000. Reference: unpublished<br /> <br /> ==Antibodies for ''Mycoplasma pneumoniae''==<br /> *anti-[[GlpD]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X0.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed] <br /> *anti-[[GlpK]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed]</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Antibodies&diff=208745 2015-08-20T11:10:58Z

<p>Cbloetz: /* Antibodies for Bacillus subtilis */</p> <hr /> <div>Here you can find a list of available antibodies:<br /> <br /> ==General Antibodies==<br /> *anti-FLAG: Supplier: Sigma-Aldrich. Dilution: 1:10.000<br /> *anti-GFP: Supplier: MBL, Medical &amp; Biological Laboratories. Dilution: 1:10.000<br /> *anti-Strep: Supplier: IBA, Göttingen. Dilution: 1:1.000<br /> *anti-rabbit-IgG-AP secondary antibody: Supplier: Promega. Dilution: 1:100.000<br /> <br /> ==Antibodies for ''Bacillus subtilis''==<br /> * anti-[[CggR]]: Generation: By a poor rabbit @ the SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[DarA]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[GapA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/12634343 PubMed] <br /> * anti-[[GltC]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:30.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed] <br /> * anti-[[RocG]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:15.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/17608797 PubMed]<br /> * anti-[[ClpC]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpE]]: from [[Ulf Gerth]], Dilution: 1:30.000<br /> * anti-[[ClpP]]: from [[Ulf Gerth]], Dilution: 1:100.000<br /> * anti-[[NrgB]]: Generation: SeqLab Sequencing Laboratories. {{PubMed|14600241}}<br /> * anti-[[Rny]]: from [[Jan Maarten van Dijl]], dilution 1:100.000<br /> * anti-[[Eno]]: Generation: SeqLab Sequencing Laboratories. Dilution 1:10,000. Reference: unpublished<br /> * anti-[[AccAD]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccB]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccC]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> * anti-[[AccD]]: from [[xxx]], dilution 1:xxx Reference: unpublished<br /> <br /> ==Antibodies for ''Listeria monocytogenes''==<br /> *anti-[[CdaA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:5.000. Reference: unpublished<br /> *anti-[[PrfA]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:10.000. Reference: unpublished<br /> <br /> ==Antibodies for ''Mycoplasma pneumoniae''==<br /> *anti-[[GlpD]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X0.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed] <br /> *anti-[[GlpK]]: Generation: SeqLab Sequencing Laboratories. Dilution: 1:X.000. Reference: [http://www.ncbi.nlm.nih.gov/pubmed/19028882 PubMed]</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Methods&diff=207504 2015-04-02T11:15:59Z

<p>Cbloetz: </p> <hr /> <div>Here you can find a list of methods for working with ''Bacillus subtilis'':<br /> <br /> == Media ==<br /> * [[C minimal medium]]<br /> * [[M9 minimal medium]]<br /> <br /> ==Analysis of protein-protein interactions==<br /> * Bacterial Two Hybrid: [[BACTH]]<br /> <br /> * [[SPINE]]: A method to detect ''in vivo'' [[protein-protein interactions]]<br /> <br /> * ''in vivo'' detection of [[protein-protein interactions]] using [[DivIVA]] and GFP {{PubMed|19698693}}<br /> <br /> ==Analysis of membrane proteins==<br /> * application of a split green fluorescent protein reporter {{PubMed|22285978}}<br /> <br /> == Antibodies ==<br /> * List of available [[Antibodies]]<br /> <br /> == Protein expression ==<br /> * the LIKE system {{PubMed|23110498}}<br /> <br /> ==Strain construction==<br /> * introduction of markerfree deletions: {{PubMed|24140578,23916947,23911571,22422839,20057169}}<br /> * generation of markerfree mutations: {{PubMed|20134232,21542786,24282588}}<br /> * an improved method for transformation: {{PubMed|24838881}}<br /> <br /> ==RNA analysis==<br /> * Mechanical cell disruption and extraction of RNA from ''B. subtilis'': [[Media:SOP-RNA.pdf]]<br /> <br /> ==Genetic work with non-standard strains==<br /> * transformation of wild-type ''B. subtilis'' strains incl. NCIB3610: {{PubMed|20300532}}<br /> * efficient electroporation of ''B. subtilis'' {{PubMed|22387342}}<br /> * a novel transformation protocol for ''B. subtilis'' DB104 {{PubMed|22395911}}<br /> <br /> ==General procedures==<br /> * Standard operation procedures ([[SOP]]s) of the SYSMO-BACELL consortium<br /> <br /> ==Microscopic techniques==<br /> * Live cell imaging of ''B. subtilis'' cells using automated time-lapse microscopy {{PubMed|21841760}}<br /> * Assay of gene expression dynamics using live cell imaging {{PubMed|22179594}}<br /> * Visualization and quantification of gene expression heterogeneity in growing microbial cells {{PubMed|23874729}}<br /> * GFP variants specifically optimizd for use in ''B. subtilis'' {{PubMed|23956387}}<br /> * Quantitative analysis of cell types by comparing microscoy images {{PubMed|25448819}}<br /> <br /> ==Transposon mutagenesis==<br /> * mariner transposon mutagenesis for random inducible-expression insertions and transcriptional reporter fusion insertions {{PubMed|22113911}}<br /> <br /> ==Protein-DNA interactions==<br /> * ChAP-chip: A modified ChIP-chip protocol for the ''in vivo'' identification of binding sites of DNA-binding proteins {{PubMed|17932079}}<br /> <br /> ==Genome engineering==<br /> * generalized bacterial genome editing using mobile group II introns and Cre-lox {{PubMed|24002656}}<br /> * genome engineering using a synthetic gene circuit {{PubMed|25552415}}<br /> * A review on genome engineering:<br /> &lt;pubmed&gt;23340847 &lt;/pubmed&gt;<br /> <br /> == Visual descriptions of methods for ''B. subtilis'' in the ''Journal of Visual Experimentation'' ==<br /> &lt;pubmed&gt; 24473333 24457605 24300024 24300445 22371091 20142799 21841760 &lt;/pubmed&gt;<br /> <br /> ==Key references==<br /> &lt;pubmed&gt;22179594 20057169 20134232 21542786 20300532 19698693 17932079 21841760 17994626 23956387 22285978,22113911 24002656 24282588 &lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Antibodies&diff=207503 2015-04-02T11:11:46Z

<p>Cbloetz: </p> <hr /> <div>Here you can find a list of available antibodies:<br /> <br /> ==General Antibodies==<br /> *anti-[[GFP]]: Dilution <br /> *anti-[[FLAG]]<br /> *anti-[[Strep]]<br /> *anti-[[His6]]<br /> <br /> ==Antibodies for ''Bacillus subtilis''==<br /> * anti-[[DarA]]: Dilution 1:10,000<br /> <br /> ==Antibodies for ''Listeria monocytogenes''==<br /> * [[xxx]]: nnnnnnnnnnnnn<br /> <br /> ==Antibodies for ''Mycoplasma pneumoniae''==<br /> *[[xxx]]: ennnnnnnnnn</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=User:Cbloetz&diff=207502 2015-04-02T11:11:20Z

<p>Cbloetz: Blanked the page</p> <hr /> <div></div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Antibodies&diff=207501 2015-04-02T11:10:55Z

<p>Cbloetz: Created page with &quot;List of antibodies&quot;</p> <hr /> <div>List of antibodies</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=User:Cbloetz&diff=207500 2015-04-02T10:59:09Z

<p>Cbloetz: Created page with &quot;Here you can find a list of available antibodies: ==General Antibodies== *anti-GFP: Dilution *anti-FLAG *anti-Strep *anti-His6 ==Antibodies for ''Bacillus s...&quot;</p> <hr /> <div>Here you can find a list of available antibodies:<br /> <br /> ==General Antibodies==<br /> *anti-[[GFP]]: Dilution <br /> *anti-[[FLAG]]<br /> *anti-[[Strep]]<br /> *anti-[[His6]]<br /> <br /> ==Antibodies for ''Bacillus subtilis''==<br /> * anti-[[DarA]]: Dilution 1:10,000<br /> <br /> ==Antibodies for ''Listeria monocytogenes''==<br /> * [[xxx]]: nnnnnnnnnnnnn<br /> <br /> ==Antibodies for ''Mycoplasma pneumoniae''==<br /> *[[xxx]]: ennnnnnnnnn</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=Methods&diff=207499 2015-04-02T10:50:39Z

<p>Cbloetz: </p> <hr /> <div>Here you can find a list of methods for working with ''Bacillus subtilis'':<br /> <br /> == Media ==<br /> * [[C minimal medium]]<br /> * [[M9 minimal medium]]<br /> <br /> ==Analysis of protein-protein interactions==<br /> * Bacterial Two Hybrid: [[BACTH]]<br /> <br /> * [[SPINE]]: A method to detect ''in vivo'' [[protein-protein interactions]]<br /> <br /> * ''in vivo'' detection of [[protein-protein interactions]] using [[DivIVA]] and GFP {{PubMed|19698693}}<br /> <br /> ==Analysis of membrane proteins==<br /> * application of a split green fluorescent protein reporter {{PubMed|22285978}}<br /> <br /> == Antibodies ==<br /> * [[List of Antibodies]]<br /> <br /> == Protein expression ==<br /> * the LIKE system {{PubMed|23110498}}<br /> <br /> ==Strain construction==<br /> * introduction of markerfree deletions: {{PubMed|24140578,23916947,23911571,22422839,20057169}}<br /> * generation of markerfree mutations: {{PubMed|20134232,21542786,24282588}}<br /> * an improved method for transformation: {{PubMed|24838881}}<br /> <br /> ==RNA analysis==<br /> * Mechanical cell disruption and extraction of RNA from ''B. subtilis'': [[Media:SOP-RNA.pdf]]<br /> <br /> ==Genetic work with non-standard strains==<br /> * transformation of wild-type ''B. subtilis'' strains incl. NCIB3610: {{PubMed|20300532}}<br /> * efficient electroporation of ''B. subtilis'' {{PubMed|22387342}}<br /> * a novel transformation protocol for ''B. subtilis'' DB104 {{PubMed|22395911}}<br /> <br /> ==General procedures==<br /> * Standard operation procedures ([[SOP]]s) of the SYSMO-BACELL consortium<br /> <br /> ==Microscopic techniques==<br /> * Live cell imaging of ''B. subtilis'' cells using automated time-lapse microscopy {{PubMed|21841760}}<br /> * Assay of gene expression dynamics using live cell imaging {{PubMed|22179594}}<br /> * Visualization and quantification of gene expression heterogeneity in growing microbial cells {{PubMed|23874729}}<br /> * GFP variants specifically optimizd for use in ''B. subtilis'' {{PubMed|23956387}}<br /> * Quantitative analysis of cell types by comparing microscoy images {{PubMed|25448819}}<br /> <br /> ==Transposon mutagenesis==<br /> * mariner transposon mutagenesis for random inducible-expression insertions and transcriptional reporter fusion insertions {{PubMed|22113911}}<br /> <br /> ==Protein-DNA interactions==<br /> * ChAP-chip: A modified ChIP-chip protocol for the ''in vivo'' identification of binding sites of DNA-binding proteins {{PubMed|17932079}}<br /> <br /> ==Genome engineering==<br /> * generalized bacterial genome editing using mobile group II introns and Cre-lox {{PubMed|24002656}}<br /> * genome engineering using a synthetic gene circuit {{PubMed|25552415}}<br /> * A review on genome engineering:<br /> &lt;pubmed&gt;23340847 &lt;/pubmed&gt;<br /> <br /> == Visual descriptions of methods for ''B. subtilis'' in the ''Journal of Visual Experimentation'' ==<br /> &lt;pubmed&gt; 24473333 24457605 24300024 24300445 22371091 20142799 21841760 &lt;/pubmed&gt;<br /> <br /> ==Key references==<br /> &lt;pubmed&gt;22179594 20057169 20134232 21542786 20300532 19698693 17932079 21841760 17994626 23956387 22285978,22113911 24002656 24282588 &lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205426 2014-05-13T08:15:26Z

<p>Cbloetz: /* Publications describing SubtiWiki and SubtiPathways */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> ===[http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wAgIW Molybdopterin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=3vSpz NAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Zjt4G Lipoate synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=moarx Pyridoxalphospahte synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=AwkEg S-adenosylmethionine synthesis] ===<br /> <br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LlfNo Peptidoglycan synthesis] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=RqnXf Peptidoglycan catabolism] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aARFz Teichonic acid] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=RDamU ppGpp] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Tvl8u cdAMP] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=E6M7Y cdGMP] ===<br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=BPSRv Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=95Yqn Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V1JFH Acquisition of iron ] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LNqKW Metal ion homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pM5k3 Trace metal homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4FfA6 Amino acids transporter] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=KheJp Bactoprenol synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=SO2Za Methylglyoxal pathway] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=YDHgj Respiration] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228 24178028&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205425 2014-05-13T08:10:03Z

<p>Cbloetz: /* Other pathways */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> ===[http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wAgIW Molybdopterin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=3vSpz NAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Zjt4G Lipoate synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=moarx Pyridoxalphospahte synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=AwkEg S-adenosylmethionine synthesis] ===<br /> <br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LlfNo Peptidoglycan synthesis] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=RqnXf Peptidoglycan catabolism] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aARFz Teichonic acid] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=RDamU ppGpp] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Tvl8u cdAMP] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=E6M7Y cdGMP] ===<br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=BPSRv Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=95Yqn Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V1JFH Acquisition of iron ] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LNqKW Metal ion homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pM5k3 Trace metal homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4FfA6 Amino acids transporter] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=KheJp Bactoprenol synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=SO2Za Methylglyoxal pathway] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=YDHgj Respiration] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205424 2014-05-13T08:06:17Z

<p>Cbloetz: /* Other pathways */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> ===[http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wAgIW Molybdopterin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=3vSpz NAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Zjt4G Lipoate synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=moarx Pyridoxalphospahte synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=AwkEg S-adenosylmethionine synthesis] ===<br /> <br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=RqnXf Peptidoglycan catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=BPSRv Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V1JFH Acquisition of iron ] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LNqKW Metal ion homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pM5k3 Trace metal homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4FfA6 Amino acids transporter] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=KheJp Bactoprenol synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=SO2Za Methylglyoxal pathway] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205423 2014-05-13T08:05:40Z

<p>Cbloetz: /* Other pathways */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> ===[http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wAgIW Molybdopterin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=3vSpz NAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Zjt4G Lipoate synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=moarx Pyridoxalphospahte synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=AwkEg S-adenosylmethionine synthesis] ===<br /> <br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=BPSRv Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V1JFH Acquisition of iron ] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=LNqKW Metal ion homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pM5k3 Trace metal homeostasis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4FfA6 Amino acids transporter] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=KheJp Bactoprenol synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=SO2Za Methylglyoxal pathway] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205422 2014-05-13T07:56:36Z

<p>Cbloetz: /* Metabolism of cofactors */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> ===[http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wAgIW Molybdopterin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=3vSpz NAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Zjt4G Lipoate synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=moarx Pyridoxalphospahte synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=AwkEg S-adenosylmethionine synthesis] ===<br /> <br /> <br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205421 2014-05-13T07:31:51Z

<p>Cbloetz: /* Metabolism of cofactors */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=op4I3 Heme biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205420 2014-05-13T07:30:49Z

<p>Cbloetz: /* Biotin synthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=8iQpH Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205419 2014-05-13T07:30:28Z

<p>Cbloetz: /* Thiamin synthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=wTyck Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205418 2014-05-13T07:30:03Z

<p>Cbloetz: /* Riboflavin and FAD synthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=4Ww0E Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205417 2014-05-13T07:29:28Z

<p>Cbloetz: /* Menaquinone */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=2GTKN Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205416 2014-05-13T07:29:03Z

<p>Cbloetz: /* Folate biosynthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=faSwm Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205415 2014-05-13T07:28:33Z

<p>Cbloetz: /* CoA synthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cUo5h CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205414 2014-05-13T07:28:01Z

<p>Cbloetz: /* Nucleotides */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205413 2014-05-13T07:25:36Z

<p>Cbloetz: /* Purine catabolism */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bxwTq Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205412 2014-05-13T07:25:15Z

<p>Cbloetz: /* Purine biosynthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=etxDX Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205411 2014-05-13T07:24:27Z

<p>Cbloetz: /* Fatty acid degradation */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cnliR Fatty acid and phospholipid biosynthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205410 2014-05-13T07:23:59Z

<p>Cbloetz: /* Fatty acid and phospholipid biosynthesis */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205409 2014-05-13T07:19:44Z

<p>Cbloetz: /* Utilization of other nitrogen sources */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205408 2014-05-13T07:19:21Z

<p>Cbloetz: /* Proline */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=bM03y Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205407 2014-05-13T07:18:58Z

<p>Cbloetz: /* Phenylalanine, tyrosine, tryptophan */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=qSUN0 Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205406 2014-05-13T07:18:31Z

<p>Cbloetz: /* Isoleucine, valine, leucine */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=V2MSg Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205405 2014-05-13T07:17:45Z

<p>Cbloetz: /* Histidine */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=DNohR Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205404 2014-05-13T07:17:21Z

<p>Cbloetz: /* Cysteine, methionine */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=1Jfrj Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205403 2014-05-13T07:16:48Z

<p>Cbloetz: /* Aspartate, asparagine */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=81K4b Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205402 2014-05-13T07:16:22Z

<p>Cbloetz: /* Alanine, glycine, serine */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mONyM Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205401 2014-05-13T07:15:37Z

<p>Cbloetz: /* Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=Cog2y Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=alan Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205400 2014-05-13T07:14:52Z

<p>Cbloetz: /* Utilization of different carbon sources */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ps3UM Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=glut Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=alan Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205399 2014-05-13T07:13:31Z

<p>Cbloetz: /* Utilization of different carbon sources */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=JKtpr Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=glut Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=alan Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205398 2014-05-12T13:18:22Z

<p>Cbloetz: /* [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw] */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw Central carbon metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=carb Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=glut Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=alan Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=SubtiPathways&diff=205397 2014-05-12T13:17:14Z

<p>Cbloetz: /* Central carbon metabolism */</p> <hr /> <div>[[File:Pathway_start_page_small.png|right|link=http://subtiwiki.uni-goettingen.de/subtipathways/start.php]]<br /> [[File:Legende.jpg|250px|thumb|right|'''legend for ''Subti''Pathways &lt;br/&gt;graphical notation: click to enlarge''']]<br /> <br /> &lt;big&gt;'''''Subti''Pathways''' is a model of '''''B. subtilis''''' metabolism and regulation in '''SBML/SBGN''' (Systems Biology Markup Language/ Graphical Notation). There is a color code for key metabolites (see the legend on the right side).&lt;br/&gt;&lt;br/&gt;It can be used like Google Maps (scroll and zoom to the pathways). The markers of proteins and compounds listed on the right side in each pathway are containing links to the corresponding ''Subti''Wiki and PubChem pages, respectively. There is a short description for each protein in the bubbles, too.&lt;/big&gt;<br /> <br /> &lt;big&gt;'''Contact:'''&lt;/big&gt; [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br /> <br /> &lt;br/&gt;<br /> &lt;big&gt;'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the 2012 Database issue of Nucleic Acids Research'''&lt;/big&gt; <br /> &lt;pubmed&gt; 22096228 &lt;/pubmed&gt;<br /> __NOTOC__<br /> <br /> &lt;br/&gt;<br /> <br /> == A collection of important papers on ''B. subtilis'' [[metabolism]] can be found [[metabolism|here]] ==<br /> &lt;br/&gt;<br /> == Carbon metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=7FvYw] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=carb Utilization of different carbon sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nitrogen and amino acid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=glut Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine)] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=alan Alanine, glycine, serine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=aspa Aspartate, asparagine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=cyst Cysteine, methionine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=hist Histidine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=isol Isoleucine, valine, leucine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lysi Lysine, threonine] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=tryp Phenylalanine, tyrosine, tryptophan] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=prol Proline] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Lipid metabolism ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fatt Fatty acid and phospholipid biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html Fatty acid degradation] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Nucleotides ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Gene regulation of nucleotide metabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=nucl Nucleoside catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=meta Purine biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/purines_catabolism.html Purine catabolism] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=puri Purine salvage pathways] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=pyri Pyrimidine metabolism] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Metabolism of cofactors ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=synt CoA synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=fola Folate biosynthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=mena Menaquinone] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=ribo Riboflavin and FAD synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/thiamin.html Thiamin synthesis] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis] ===<br /> <br /> &lt;br/&gt;<br /> <br /> == Other pathways ==<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cellwall.html Cell wall] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=stre Stress responses] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html Phosphorelay] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/cys_meth_and_sulfate_assimilation.html Sulfate assimilation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=trna tRNA charging] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] ===<br /> <br /> === [http://subtiwiki.uni-goettingen.de/subtipathways/index.php?pathway=lipo Lipoate biosynthesis ] ===<br /> <br /> == Publications describing ''Subti''Wiki and ''Subti''Pathways ==<br /> &lt;pubmed&gt;19959575 22096228&lt;/pubmed&gt;</div>

Cbloetz http://subtiwiki-test.uni-goettingen.de/wiki//index.php?title=File:Legende.jpg&diff=204353 2014-04-17T11:29:57Z

<p>Cbloetz: Cbloetz uploaded a new version of &amp;quot;File:Legende.jpg&amp;quot;</p> <hr /> <div></div>

Cbloetz