SubtiWiki - User contributions [en]

BsrB

2009-06-11T08:24:21Z

BBeck: /* Labs working on this gene/RNA */

* '''Description:''' 6S RNA 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''bsrB''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]]
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 203 bp
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yocI]]'', ''[[azoR1]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]'''
|-
|colspan="2" | '''Genetic context''' [[Image:BsrB_context.gif]]
|-
|}

__TOC__

 

 
=The gene=

=== Basic information ===

* '''Locus tag:'''

===Phenotypes of a mutant ===

=== Database entries ===

* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bsrB.html]

* '''SubtiList entry:''' no entry

* '''Structure:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''bsrB'' [http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]

* '''Sigma factor:'''

* '''Regulation:''' expressed during vegetative growth[http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]

* '''Regulatory mechanism:'''

* '''Additional information:'''

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

=Labs working on this gene/RNA=

Kouji Nakamura, Tsukuba, University, Japan

Roland Hartmann, Philipps-Universität Marburg, Marburg, Germany, [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]

=Your additional remarks=

=References=

<pubmed>11886746 15811922, </pubmed>
# Ando Y, Asari S, Suzuma S, Yamane K, Nakamura K (2002) Expression of a small RNA, BS203 RNA, from the ''yocI-yocJ'' intergenic region of ''Bacillus subtilis'' genome.''FEMS Microbiol. Lett.'' '''207:''' 29-33. [http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]
# Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR(2005) 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.''RNA'' '''11:''' 774-784. [http://www.ncbi.nlm.nih.gov/sites/entrez/15811922 PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

BsrA

2009-06-11T08:23:05Z

BBeck: /* Labs working on this gene/RNA */

* '''Description:''' 6S RNA 

{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''bsrA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]]
|-
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 190 bp
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrvM]]'', ''[[aspS]]''
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]'''
|-
|colspan="2" | '''Genetic context''' [[Image:BsrA_context.jpeg]]
|-
|}

__TOC__

 

 
=The gene=

=== Basic information ===

* '''Locus tag:'''

===Phenotypes of a mutant ===

reduced growth rate [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]

=== Database entries ===

* '''DBTBS entry:''' no entry

* '''SubtiList entry:''' no entry

* '''Structure:'''

=== Additional information===

=Expression and regulation=

* '''Operon:''' ''bsrA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]

* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]

* '''Regulation:''' expressed in vegetative cells [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]

* '''Regulatory mechanism:'''

* '''Additional information:''' transcribed as 201 nt RNA, processed to mature 190 bp 6S RNA [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]

=Biological materials =

* '''Mutant:'''

* '''Expression vector:'''

* '''lacZ fusion:'''

=Labs working on this gene/RNA=

Kouji Nakamura, Tsukuba, University, Japan

Roland Hartmann, Philipps-Universität Marburg, Marburg, Germany, [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]

=Your additional remarks=

=References=

<pubmed>12177353 15811922, </pubmed>
# Suzuma S, Asari S, Bunai K, Yoshino K, Ando Y, Kakeshita H, Fujita M, Nakamura K, Yamane K (2002) Identification and characterization of novel small RNAs in the ''aspS-yrvM'' intergenic region of the ''Bacillus subtilis'' genome.. ''Microbiology'' '''148:''' 2591-2598. [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]
# Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR(2005) 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.''RNA'' '''11:''' 774-784. [http://www.ncbi.nlm.nih.gov/sites/entrez/15811922 PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Roland Hartmann

2009-06-11T08:17:55Z

BBeck: /* Main research interests */

= Lab head: Roland Hartmann=
'''Additional information'''
* [mailto:roland.hartmann@staff.uni-marburg.de send mail]
* location: Marburg, Germany
* Homepage: [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]

= Publications =
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pubmed&term=%22Hartmann%2BRK%22%5Bau%5D&dispmax=50 Pubmed]

= Main research interests =
tRNA processing, RNase P, 6S-RNA

Roland Hartmann

2009-06-11T08:17:24Z

BBeck: /* Lab head: Name Name */